Detailed information NTG1106423

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: ABJ974_RS16040
• Genome accession: NZ_CP183840
• Coordinates: 3563356..3564465 (+)
• Length: 369 a.a.
• NCBI ID: WP_419869226.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. SW-1
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 3558356..3569465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABJ974_RS16020	sufD	3558838..3560145 (+)	1308	WP_419869222.1	Fe-S cluster assembly protein SufD	-
ABJ974_RS16025	-	3560199..3561119 (-)	921	WP_419869223.1	DUF3078 domain-containing protein	-
ABJ974_RS16030	-	3561308..3562231 (-)	924	WP_419869224.1	DUF3078 domain-containing protein	-
ABJ974_RS16035	-	3562554..3563321 (+)	768	WP_419869225.1	rhomboid family intramembrane serine protease	-
ABJ974_RS16040	dprA	3563356..3564465 (+)	1110	WP_419869226.1	DNA-processing protein DprA	Machinery gene
ABJ974_RS16045	gdhA	3564656..3566014 (+)	1359	WP_419869227.1	NADP-specific glutamate dehydrogenase	-
ABJ974_RS16050	-	3566143..3566631 (-)	489	WP_419869228.1	YkgJ family cysteine cluster protein	-
ABJ974_RS16055	-	3566725..3567105 (+)	381	WP_419869229.1	group III truncated hemoglobin	-
ABJ974_RS16060	-	3567102..3568172 (-)	1071	WP_419869230.1	calcium:proton antiporter	-
ABJ974_RS16065	-	3568238..3568567 (-)	330	WP_419869231.1	DUF6122 family protein	-
ABJ974_RS16070	-	3568567..3569283 (-)	717	WP_419869232.1	DNA alkylation repair protein	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 41674.49 Da
• Isoelectric Point: 7.1506

>NTDB_id=1106423 ABJ974_RS16040 WP_419869226.1 3563356..3564465(+) (dprA) [Chryseobacterium sp. SW-1]
MYTEEHLYSIALRQCLQIGDINFSKLLKTFGNAKNTWFQAKKEYQKVDGIGYKTVMDIGNPEHLKFAEQELKFCENHQVQ
ISLRHLGQLPYLLNECDDAPSILYHKGNLDISPQYVSLIGTRNITVYGKKFIHDFFEEAQSFNFCSVSGLALGTDKEVHE
QSINHKTKTIAVLAHGFTTLYPPRNKKLSEKILEEGGTLVTEFNSSRKPDRENFLQRNRIIAGFSPSTIVVETGFGGGSI
STATYANNYNRDVYALPGKITDPYSQGCNHLIFQHKAIAISGIKNLINCLGFNTSSHQMEELFPIPTEDLQLSDNQNLIY
KTIFHNPQISLDDLSQKIDLSTHKILPVILELELLGKIRSLSGRQFVAI

Nucleotide

• Length: 1110 bp

>NTDB_id=1106423 ABJ974_RS16040 WP_419869226.1 3563356..3564465(+) (dprA) [Chryseobacterium sp. SW-1]
ATGTACACCGAAGAACATCTCTATTCCATCGCATTGCGGCAATGCCTGCAAATCGGTGATATCAATTTTTCCAAACTTCT
CAAAACGTTCGGAAATGCAAAAAACACTTGGTTCCAGGCTAAAAAAGAATATCAGAAAGTAGATGGAATAGGCTATAAAA
CCGTAATGGATATTGGAAATCCTGAGCATCTAAAATTTGCAGAACAGGAACTCAAGTTCTGTGAGAACCATCAAGTTCAA
ATCAGTCTCCGGCACCTCGGACAGCTCCCTTACTTGCTGAACGAATGTGATGACGCGCCGTCTATTCTTTACCATAAAGG
AAACCTGGATATTTCTCCCCAATATGTAAGTTTAATTGGAACCCGGAATATCACTGTGTATGGGAAAAAGTTCATCCACG
ATTTCTTCGAAGAAGCTCAAAGTTTCAATTTCTGTTCCGTAAGCGGGCTTGCCTTGGGTACGGACAAAGAAGTTCATGAG
CAGTCTATTAACCATAAAACAAAAACTATTGCCGTTCTGGCTCATGGCTTTACAACCCTCTATCCTCCCAGGAATAAAAA
GCTGTCTGAAAAGATCCTTGAGGAAGGAGGTACGCTGGTCACTGAGTTTAATTCATCCCGAAAGCCCGACAGGGAAAATT
TTCTTCAAAGAAACCGGATCATAGCAGGATTTTCGCCTTCTACCATTGTAGTGGAAACGGGCTTTGGAGGAGGCTCAATC
AGTACGGCTACCTATGCCAACAACTATAACAGAGATGTCTATGCATTACCGGGAAAGATTACCGACCCTTATAGCCAGGG
GTGTAATCATCTCATTTTTCAACATAAAGCCATTGCCATTTCAGGGATAAAAAACCTTATCAATTGTTTAGGATTTAACA
CTTCTTCTCATCAAATGGAAGAACTTTTCCCTATCCCAACAGAAGACCTACAACTATCTGATAATCAGAATTTAATCTAT
AAAACCATTTTTCACAATCCTCAGATTTCTTTGGATGATTTATCCCAAAAAATTGACCTTTCCACACACAAAATTTTACC
GGTTATTTTGGAATTGGAGCTTTTAGGCAAAATCAGGTCCCTTTCCGGGAGACAATTTGTGGCAATTTAG

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (74-278)

• DprA winged helix domain (DprA_WH) (311-363)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Riemerella anatipestifer ATCC 11845 = DSM 15868	50.136	99.458	0.499