Detailed information NTG1106410

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ABJ974_RS02780
• Genome accession: NZ_CP183840
• Coordinates: 616320..617669 (-)
• Length: 449 a.a.
• NCBI ID: WP_419869863.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. SW-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 611320..622669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABJ974_RS02760	-	612275..612853 (-)	579	WP_419869859.1	HupE/UreJ family protein	-
ABJ974_RS02765	-	612919..613419 (+)	501	WP_419869860.1	DUF6702 family protein	-
ABJ974_RS02770	-	613990..614589 (-)	600	WP_419869861.1	ACP phosphodiesterase	-
ABJ974_RS02775	-	614670..616235 (-)	1566	WP_419869862.1	zinc-dependent metalloprotease	-
ABJ974_RS02780	radA	616320..617669 (-)	1350	WP_419869863.1	DNA repair protein RadA	Machinery gene
ABJ974_RS02785	-	617891..618460 (+)	570	WP_419869864.1	YceI family protein	-
ABJ974_RS02790	-	618585..620192 (+)	1608	WP_419869865.1	CTP synthase	-
ABJ974_RS02795	yidC	620381..622180 (+)	1800	WP_419869866.1	membrane protein insertase YidC	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49810.48 Da
• Isoelectric Point: 6.6123

>NTDB_id=1106410 ABJ974_RS02780 WP_419869863.1 616320..617669(-) (radA) [Chryseobacterium sp. SW-1]
MAKLKTAYICQNCGTQYSQWMGQCKNCGQWNTLTEEIIEKAPQKSLSPVKSKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERIF

Nucleotide

• Length: 1350 bp

>NTDB_id=1106410 ABJ974_RS02780 WP_419869863.1 616320..617669(-) (radA) [Chryseobacterium sp. SW-1]
ATGGCAAAATTAAAAACAGCATATATCTGTCAAAATTGCGGCACCCAGTATTCTCAATGGATGGGACAGTGCAAAAACTG
CGGACAATGGAATACCCTTACGGAAGAGATTATTGAAAAAGCTCCTCAAAAGAGTTTATCACCCGTAAAATCCAAGCAAC
ATGTCATCAATATTATAGAAGTTGAAACCAGTGAGGAACCCCGCATCAAAACCCCTTCTGAAGAGCTGAATCGCGTATTG
GGTGGCGGTATTGTCTTAGGCTCGGTTACCTTAATCGGTGGTGAGCCAGGGATAGGAAAATCAACCCTCCTGCTGCAGCT
TGCTCTTAAAATGAAGAAAAAAATATTCTATGTTTCAGGAGAAGAGAGTGCTTCACAAATAAAAATGAGAGCGGACAGGC
TCACAGATATTCAAAATCCCAACTGTTTTTTGTTCACGGAGACTTCCCTGGAAAAAATCCTCCATGAAGCCAAAAAGCTG
GAACCTGATTTTGTCATTATTGATTCCATTCAAACCCTGCAATCTCAGCTGATAGAAAGTTCTCCCGGCACCGTTTCTCA
AATCCGGGAATGTTCCAATGAAATTATCAAGTTCGCCAAAGAAACCAATACCCCTGTTTTCCTGGTAGGTCATATTACCA
AAGACGGACAAATCGCAGGACCTAAGGTACTGGAACATATGGTGGATGTCGTTCTCAATTTCGATGGGGACAGAAATCAC
CTTTTCAGATTATTGAGGGCTAACAAAAACCGTTTCGGCTCCACTTCCGAAATCGGCATTTATGAAATGATCTCACAGGG
ACTTAAAGAAATTAAAAATCCTTCGGAAATTCTCATTACCAAAAAATTTGAAGAGCTATCCGGAAATTCAGTTGCCGTAA
CGTTGGAGGGAAACCGCCCCATGTTGTTGGAAATCCAGGCTTTGGTAAGTACTGCTGTTTACGGAACACCTCAAAGAAGC
TCTACGGGTTTTGATGCGAAAAGACTAAATATGCTCCTTGCCGTCCTGGAAAAACGGGCTGGTTTTCAGCTAGGCGCAAA
AGATGTTTTCCTTAATATCACGGGAGGAATTAAAACAGATGATCCCGCCCTGGATCTGGCTGTTGTGGCTTCCATTCTTT
CTTCCAATGAAGATATTGCCATTTCGGAACACTTCTGTTTCGCGGGAGAAATAGGTCTTAGCGGAGAAATCCGTCCTGTT
GCCCAAATCGAACAGAGAATTACCGAGGCTGAAAAATTAGGATATGAAAAGATATTCGTTTCCAATCTTAACAAAATTCC
TAAACGTAAATTCGGGATAAAGATTGAAGAAGTTAGCAAAATTGAAGATTTTCACGAAAGAATTTTTTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (338-423)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (65-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.779	100	0.501
radA	Streptococcus pneumoniae Rx1	48.253	100	0.492
radA	Streptococcus pneumoniae D39	48.253	100	0.492
radA	Streptococcus pneumoniae R6	48.253	100	0.492
radA	Streptococcus pneumoniae TIGR4	48.253	100	0.492
radA	Streptococcus mitis NCTC 12261	48.253	100	0.492
radA	Streptococcus mitis SK321	48.026	100	0.488