Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACN6M2_RS18140 Genome accession   NZ_CP183838
Coordinates   3627090..3627515 (+) Length   141 a.a.
NCBI ID   WP_411501798.1    Uniprot ID   -
Organism   Brevibacillus centrosporus strain L3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3622090..3632515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6M2_RS18125 (ACN6M2_18125) - 3623598..3624905 (+) 1308 WP_419877099.1 MFS transporter -
  ACN6M2_RS18130 (ACN6M2_18130) - 3624984..3625523 (-) 540 WP_419877100.1 NUDIX hydrolase -
  ACN6M2_RS18135 (ACN6M2_18135) - 3625643..3626752 (-) 1110 WP_419877101.1 M48 family metallopeptidase -
  ACN6M2_RS18140 (ACN6M2_18140) nucA/comI 3627090..3627515 (+) 426 WP_411501798.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACN6M2_RS18145 (ACN6M2_18145) - 3627616..3628227 (-) 612 WP_419877102.1 TetR/AcrR family transcriptional regulator -
  ACN6M2_RS18150 (ACN6M2_18150) - 3628688..3629407 (+) 720 WP_411501799.1 3-ketoacyl-ACP reductase -
  ACN6M2_RS18155 (ACN6M2_18155) - 3629555..3629998 (+) 444 WP_328211191.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACN6M2_RS18160 (ACN6M2_18160) - 3630005..3631408 (+) 1404 WP_400586526.1 MDR family MFS transporter -
  ACN6M2_RS18165 (ACN6M2_18165) lgt 3631438..3632229 (+) 792 WP_419877103.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15663.71 Da        Isoelectric Point: 7.1323

>NTDB_id=1106392 ACN6M2_RS18140 WP_411501798.1 3627090..3627515(+) (nucA/comI) [Brevibacillus centrosporus strain L3]
MQKKMILFLLAVLFAIGSYFFEQKSPQTQTSNTEADYVLVFPSSKYPQTAEHIRSAIAKGHSAVCTIDRKGADENREQSL
KGVPTKPRYDRDEWPMAMCQEGGSGADIAYISPSDNRGAGSWIANQVEDYPDGTRVKIVIK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1106392 ACN6M2_RS18140 WP_411501798.1 3627090..3627515(+) (nucA/comI) [Brevibacillus centrosporus strain L3]
ATGCAGAAAAAAATGATCCTGTTCCTTCTCGCTGTCTTGTTTGCGATCGGCTCCTATTTCTTCGAGCAGAAGAGCCCGCA
GACGCAGACGAGCAACACAGAAGCGGACTACGTGCTGGTATTCCCGAGCAGCAAATACCCGCAGACGGCCGAGCATATCC
GTTCTGCCATCGCGAAAGGACATTCCGCCGTGTGTACCATCGACCGAAAAGGGGCAGATGAAAACAGGGAGCAATCCCTC
AAAGGCGTTCCCACAAAGCCTCGTTACGACCGAGATGAATGGCCAATGGCGATGTGCCAGGAAGGTGGCAGTGGTGCAGA
TATTGCCTACATCTCTCCCTCCGACAATCGCGGTGCTGGCTCCTGGATTGCCAATCAGGTAGAGGACTACCCCGATGGGA
CTCGCGTAAAAATTGTCATCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.317

89.362

0.539

Multiple sequence alignment