Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ACN6K0_RS03880 Genome accession   NZ_CP183830
Coordinates   781590..782420 (+) Length   276 a.a.
NCBI ID   WP_419894307.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain T25a     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 776590..787420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6K0_RS03865 (ACN6K0_03865) - 778171..778485 (-) 315 WP_003704272.1 ArsR/SmtB family transcription factor -
  ACN6K0_RS03870 (ACN6K0_03870) - 778635..780566 (+) 1932 WP_419894305.1 heavy metal translocating P-type ATPase -
  ACN6K0_RS03875 (ACN6K0_03875) - 780619..781221 (-) 603 WP_419894306.1 nitroreductase family protein -
  ACN6K0_RS03880 (ACN6K0_03880) endA 781590..782420 (+) 831 WP_419894307.1 DNA/RNA non-specific endonuclease Machinery gene
  ACN6K0_RS03885 (ACN6K0_03885) - 782475..782741 (-) 267 WP_003701014.1 hypothetical protein -
  ACN6K0_RS03890 (ACN6K0_03890) brnQ 783281..784663 (+) 1383 WP_004564032.1 branched-chain amino acid transport system II carrier protein -
  ACN6K0_RS03895 (ACN6K0_03895) dhaS 784809..785333 (+) 525 WP_003704309.1 dihydroxyacetone kinase transcriptional activator DhaS -
  ACN6K0_RS03900 (ACN6K0_03900) - 785334..786290 (-) 957 WP_419894308.1 DhaKLM operon coactivator DhaQ -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30451.87 Da        Isoelectric Point: 10.6053

>NTDB_id=1106349 ACN6K0_RS03880 WP_419894307.1 781590..782420(+) (endA) [Ligilactobacillus salivarius strain T25a]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEKQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDIYDGNNLVPAGV
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=1106349 ACN6K0_RS03880 WP_419894307.1 781590..782420(+) (endA) [Ligilactobacillus salivarius strain T25a]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGAAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGCCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGGCAGGTACAAAATTTGCCTGGTAGATTCAAGCATGCTTAT
GATAGAGGGCATTTATTAGCATATGCGCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATATCTATGATGGTAATAATCTAGTGCCAGCAGGAGTA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489

Multiple sequence alignment