Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACN6K0_RS01305 Genome accession   NZ_CP183830
Coordinates   231836..233653 (-) Length   605 a.a.
NCBI ID   WP_419894140.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain T25a     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 226836..238653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6K0_RS01280 (ACN6K0_01280) pstB 227502..228296 (-) 795 WP_419894138.1 phosphate ABC transporter ATP-binding protein PstB -
  ACN6K0_RS01285 (ACN6K0_01285) pstA 228301..229191 (-) 891 WP_003708300.1 phosphate ABC transporter permease PstA -
  ACN6K0_RS01290 (ACN6K0_01290) pstC 229191..230108 (-) 918 WP_034983079.1 phosphate ABC transporter permease subunit PstC -
  ACN6K0_RS01295 (ACN6K0_01295) - 230119..230973 (-) 855 WP_419894139.1 phosphate ABC transporter substrate-binding protein -
  ACN6K0_RS01300 (ACN6K0_01300) - 231150..231746 (+) 597 WP_162853479.1 ClpXP adapter SpxH family protein -
  ACN6K0_RS01305 (ACN6K0_01305) pepF 231836..233653 (-) 1818 WP_419894140.1 oligoendopeptidase F Regulator
  ACN6K0_RS01310 (ACN6K0_01310) - 233751..234650 (-) 900 WP_081533742.1 competence protein CoiA -
  ACN6K0_RS01315 (ACN6K0_01315) - 234699..235460 (-) 762 WP_081533740.1 adaptor protein MecA -
  ACN6K0_RS01320 (ACN6K0_01320) - 235564..237210 (-) 1647 WP_419894141.1 phosphoenolpyruvate carboxykinase (ATP) -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70501.72 Da        Isoelectric Point: 5.7617

>NTDB_id=1106338 ACN6K0_RS01305 WP_419894140.1 231836..233653(-) (pepF) [Ligilactobacillus salivarius strain T25a]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDEVQNFRKLQGTMDQGSQRFLQIIENFLSINRKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKIKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNRKVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNDKKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGSDVVSDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1106338 ACN6K0_RS01305 WP_419894140.1 231836..233653(-) (pepF) [Ligilactobacillus salivarius strain T25a]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTTGAAAAGGAGTACCAAGCTGTAAAAGATGAAGTACAGAACTTCAGAAAATTACAAGGTACAA
TGGATCAAGGTAGTCAAAGATTTTTACAAATCATTGAAAATTTCTTAAGTATTAATAGGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTTGAATTAGATGAAGATAAAATAAAGCAATATTTTGTAG
AAAAAAAGGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAACATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGAAAGTTAGAAAAGCTGCATTCAAGGGATTATACAGTGTTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TCATATTCCAACAGAAGTCTATGATGTTTTACTGGAACAAGTACACAAAAATCTTCCTTTACTACATCGCTATGTAAAAC
TTAGAAAGAAGATATTAGGTGTCGATGAACTCCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TACAATTACATTCAAGCACAAATTGAAGCTAAAAAAGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGCGGAGCATATTCATCAGGAGTTTATGATA
CTCCACCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACTTTGGTACACGAGATGGGACATAGTATG
CATAGTTATTATACTAGTCATAATCAACCTTATCAGTATGGAGATTATCCAATATTTTTGGCAGAAATAGCTTCAACGAC
TAATGAAAATATTTTGACAGATTATTTATTAAAGAATAACGATAAAAAAGAGATATTAATTTATATTTTAAATCACTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAAAATTCCAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGAATTAAATAAGAAATACTATGGTAGTGATGTAGTAAG
TGATCCTGAGATAGCTTTAGAATGGGCTAGAATTCCGCATTTCTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCGGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGTGATGAAAATAAATTAAATAAATATTTAACTTACTTAAAA
GCAGGTAGTAGTAAATATCCATTGGAAGTTATGAAAGATGCGGGTGTGGATATGACAGATTCTTCATACTTAGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.209

97.851

0.521

Multiple sequence alignment