Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACN6K0_RS00515 Genome accession   NZ_CP183830
Coordinates   100127..101794 (-) Length   555 a.a.
NCBI ID   WP_419894114.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain T25a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 95127..106794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6K0_RS00485 (ACN6K0_00485) - 96287..97576 (+) 1290 WP_003708871.1 ISL3 family transposase -
  ACN6K0_RS00490 (ACN6K0_00490) - 97701..98000 (-) 300 WP_003705935.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  ACN6K0_RS00495 (ACN6K0_00495) yihA 98018..98608 (-) 591 WP_003699861.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACN6K0_RS00500 (ACN6K0_00500) - 98691..98915 (-) 225 WP_003705934.1 YneF family protein -
  ACN6K0_RS00505 (ACN6K0_00505) - 99042..99296 (-) 255 WP_003704077.1 DUF896 domain-containing protein -
  ACN6K0_RS00510 (ACN6K0_00510) lexA 99443..100063 (+) 621 WP_003699857.1 transcriptional repressor LexA -
  ACN6K0_RS00515 (ACN6K0_00515) recN 100127..101794 (-) 1668 WP_419894114.1 DNA repair protein RecN Machinery gene
  ACN6K0_RS00520 (ACN6K0_00520) - 101799..102257 (-) 459 WP_003699854.1 arginine repressor -
  ACN6K0_RS00525 (ACN6K0_00525) - 102282..103109 (-) 828 WP_419894115.1 TlyA family RNA methyltransferase -
  ACN6K0_RS00530 (ACN6K0_00530) - 103112..104029 (-) 918 WP_187397680.1 polyprenyl synthetase family protein -
  ACN6K0_RS00535 (ACN6K0_00535) - 103995..104222 (-) 228 WP_003705929.1 exodeoxyribonuclease VII small subunit -
  ACN6K0_RS00540 (ACN6K0_00540) xseA 104222..105562 (-) 1341 WP_187397679.1 exodeoxyribonuclease VII large subunit -
  ACN6K0_RS00545 (ACN6K0_00545) folD 105555..106412 (-) 858 WP_003705927.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63219.05 Da        Isoelectric Point: 4.8829

>NTDB_id=1106334 ACN6K0_RS00515 WP_419894114.1 100127..101794(-) (recN) [Ligilactobacillus salivarius strain T25a]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EKYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSELRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIGEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDVARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHIRIVKELREMENAEQNSEKQERQLSEALEKVKELAIRLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLEELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=1106334 ACN6K0_RS00515 WP_419894114.1 100127..101794(-) (recN) [Ligilactobacillus salivarius strain T25a]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTACTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAAAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTAGCAACTTTACGAAAGGTAGGAGAAACATTAATAGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAATCATATAGATTTGTTAGATGAATATGATAAAAAAACATCTGAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGGAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTAG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAGAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGTTGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAACGAAATAGAGGAAAGACTAGAGTTGATTCATCAATTGAAAAGAAAATATGGTGATACGATA
GAGGATATTTTGCATTATCATATTAGAATTGTAAAAGAATTAAGAGAAATGGAGAATGCGGAACAAAATTCAGAAAAGCA
AGAGAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAGACTTTCGAAACAGCGGAAAAAAAGCGCTA
AAAAATTAGAAAAAATGATTCATGAACAATTAAGTGCATTATATATGGACAAAGCCGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTATATTCTAAAGGTATTGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGGATAATGTTAGCTTTAAAAACAATTTTTTCGCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAGGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTATTATATTTCAAA
ATCTGTTAACGATGGTAGAACAGAAACTTCATTAGAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACGTTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.552

100

0.49

Multiple sequence alignment