Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   ACN5ZK_RS03625 Genome accession   NZ_CP183824
Coordinates   650312..651937 (-) Length   541 a.a.
NCBI ID   WP_419743991.1    Uniprot ID   -
Organism   Macrococcoides bohemicum strain HLJ23     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 645312..656937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN5ZK_RS03575 (ACN5ZK_03575) - 645350..645853 (-) 504 WP_419743986.1 hypothetical protein -
  ACN5ZK_RS03580 (ACN5ZK_03580) - 645825..646007 (-) 183 WP_203545925.1 hypothetical protein -
  ACN5ZK_RS03585 (ACN5ZK_03585) - 646015..646263 (-) 249 WP_419743987.1 hypothetical protein -
  ACN5ZK_RS03590 (ACN5ZK_03590) - 646238..646720 (-) 483 WP_419743988.1 hypothetical protein -
  ACN5ZK_RS03595 (ACN5ZK_03595) - 646726..647610 (-) 885 WP_419743989.1 hypothetical protein -
  ACN5ZK_RS03600 (ACN5ZK_03600) - 647789..648232 (-) 444 WP_133353683.1 JAB domain-containing protein -
  ACN5ZK_RS03605 (ACN5ZK_03605) - 648255..648758 (-) 504 WP_133353684.1 DUF1643 domain-containing protein -
  ACN5ZK_RS03610 (ACN5ZK_03610) - 648777..649103 (-) 327 WP_419743990.1 DUF960 family protein -
  ACN5ZK_RS03615 (ACN5ZK_03615) - 649166..649525 (-) 360 WP_165958605.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ACN5ZK_RS03620 (ACN5ZK_03620) - 650001..650195 (+) 195 WP_203545933.1 hypothetical protein -
  ACN5ZK_RS03625 (ACN5ZK_03625) ccrB 650312..651937 (-) 1626 WP_419743991.1 recombinase family protein Machinery gene
  ACN5ZK_RS03630 (ACN5ZK_03630) - 651940..653307 (-) 1368 WP_419743992.1 recombinase family protein -
  ACN5ZK_RS03635 (ACN5ZK_03635) - 653472..655340 (-) 1869 WP_419743993.1 DUF927 domain-containing protein -
  ACN5ZK_RS03640 (ACN5ZK_03640) - 655423..655737 (-) 315 WP_419743994.1 hypothetical protein -
  ACN5ZK_RS03645 (ACN5ZK_03645) - 655724..656311 (-) 588 WP_419743995.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 61784.15 Da        Isoelectric Point: 9.6382

>NTDB_id=1106314 ACN5ZK_RS03625 WP_419743991.1 650312..651937(-) (ccrB) [Macrococcoides bohemicum strain HLJ23]
MNKKAAIYARVSTVAQAEEGFSIDGQIALLKDVCIQNGYDIYNIYVDRGISGKNMDRPALLQMNEDARQGKFQVIAVFKA
NRLARNTSDLLKMVEEYQKNNIEFFSHSEKFDTTTAAGKLMLQIMASLGEYERSSLNEGVLLGQCKRANNGYYNGNKLLG
YDKIPNDKKHLKVNESEAEIVRRIFKEYANGRGYRAIANGLNKDGLRTKKGNPFDIAGVKYILNNVFYIGQIKFQQYIGW
NEKRRKGYNPNPIIAEGKHEPIIEKELWNKVHRRMAEMSKKPQVHGKGTNVLTGLIRCPICKRSHSASNTINMVKGEKKK
IRYYSCSQFKNKGASVCSANSVRADLIEPYVMNRIIEVINNDKILDKVVEKANERLQEQPVQIDRNINIKKAELVELQTK
LNNLTVALASSPDLAPVLKDSINEYQENISKIENEILLLTEKLKNEFIPTISVDEVKEALEAIFKNVERLEKHQLKALYL
SVIEEIHFRKHKEPGKKYEFFITLKITPEVLKEVFNDKQPEEAPLSASSLFLSNNILYLEI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=1106314 ACN5ZK_RS03625 WP_419743991.1 650312..651937(-) (ccrB) [Macrococcoides bohemicum strain HLJ23]
ATGAATAAAAAAGCAGCGATTTACGCAAGGGTCTCTACAGTAGCTCAAGCAGAAGAAGGGTTTAGTATTGATGGTCAAAT
TGCATTATTAAAGGATGTTTGTATTCAAAATGGTTATGACATATATAACATATACGTCGACAGAGGAATTAGTGGTAAAA
ATATGGATCGTCCTGCATTATTACAGATGAATGAGGATGCACGTCAAGGAAAATTTCAAGTAATCGCAGTTTTTAAAGCA
AATCGATTAGCTCGTAATACATCTGACTTATTAAAGATGGTCGAAGAGTATCAAAAAAATAATATTGAATTTTTTAGCCA
TTCAGAAAAATTTGACACAACAACTGCTGCCGGTAAGTTGATGTTACAAATAATGGCATCGCTAGGAGAATATGAAAGGT
CAAGTTTGAATGAAGGAGTCCTTTTAGGCCAGTGTAAGAGAGCAAATAATGGATACTATAACGGGAACAAACTATTAGGT
TATGACAAGATTCCCAACGATAAGAAACATTTAAAAGTTAATGAATCAGAGGCTGAAATTGTTAGACGAATATTCAAAGA
ATATGCCAATGGTAGAGGTTATCGTGCAATTGCGAATGGTCTTAACAAAGATGGTCTAAGAACAAAGAAAGGTAATCCAT
TCGATATTGCTGGTGTGAAGTATATCCTTAATAATGTATTTTATATCGGTCAAATCAAGTTCCAACAATACATCGGGTGG
AATGAGAAGAGACGTAAAGGATATAACCCTAATCCTATTATCGCAGAAGGTAAACACGAGCCAATTATAGAGAAAGAACT
GTGGAATAAGGTTCATCGACGTATGGCAGAAATGAGCAAAAAGCCTCAGGTTCATGGCAAAGGGACAAATGTATTAACTG
GCTTGATCCGATGCCCTATTTGTAAGCGTTCTCATTCTGCAAGTAATACTATCAACATGGTAAAGGGTGAGAAGAAAAAA
ATTCGTTATTACTCATGTAGTCAATTTAAAAATAAAGGTGCATCAGTGTGTTCAGCAAATTCGGTACGAGCTGACCTTAT
AGAACCTTACGTCATGAATAGAATCATCGAAGTAATTAATAATGATAAAATTCTAGATAAAGTAGTTGAAAAAGCGAATG
AACGACTTCAGGAACAACCCGTACAGATAGATCGTAACATTAACATCAAAAAAGCTGAACTGGTTGAATTACAAACAAAG
CTAAATAACTTAACTGTAGCTTTAGCATCTTCACCTGATTTAGCTCCCGTACTAAAAGATAGTATCAATGAATATCAGGA
AAACATCTCAAAAATCGAGAATGAGATACTATTACTCACTGAAAAACTTAAAAACGAGTTTATACCCACTATATCAGTTG
ATGAAGTTAAGGAAGCACTGGAAGCTATTTTCAAAAACGTAGAACGTTTGGAGAAGCATCAACTTAAAGCTTTATACCTA
TCAGTCATTGAAGAAATTCACTTTAGAAAACACAAAGAACCTGGAAAGAAATATGAATTCTTTATAACACTCAAGATCAC
ACCAGAAGTATTAAAAGAAGTATTCAATGATAAACAACCAGAGGAAGCGCCACTCAGCGCTTCCTCTTTATTTTTGTCTA
ATAACATACTATATCTAGAGATATGA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(291-355)

Recombinase (Recombinase)

(176-277)

Resolvase, N terminal domain (Resolvase)

(5-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

51.111

99.815

0.51

Multiple sequence alignment