Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN5ZK_RS02840 Genome accession   NZ_CP183824
Coordinates   506354..507715 (-) Length   453 a.a.
NCBI ID   WP_419743956.1    Uniprot ID   -
Organism   Macrococcoides bohemicum strain HLJ23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 501354..512715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN5ZK_RS02815 (ACN5ZK_02815) cysE 501779..502420 (-) 642 WP_096077856.1 serine O-acetyltransferase -
  ACN5ZK_RS02820 (ACN5ZK_02820) gltX 502669..504123 (-) 1455 WP_199798157.1 glutamate--tRNA ligase -
  ACN5ZK_RS02825 (ACN5ZK_02825) ispF 504134..504616 (-) 483 WP_203545869.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACN5ZK_RS02830 (ACN5ZK_02830) ispD 504613..505284 (-) 672 WP_331463567.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACN5ZK_RS02835 (ACN5ZK_02835) - 505286..506341 (-) 1056 WP_096077852.1 PIN/TRAM domain-containing protein -
  ACN5ZK_RS02840 (ACN5ZK_02840) radA 506354..507715 (-) 1362 WP_419743956.1 DNA repair protein RadA Machinery gene
  ACN5ZK_RS02845 (ACN5ZK_02845) - 507868..510291 (-) 2424 WP_096077850.1 ATP-dependent Clp protease ATP-binding subunit -
  ACN5ZK_RS02850 (ACN5ZK_02850) - 510304..511314 (-) 1011 WP_219497824.1 protein arginine kinase -
  ACN5ZK_RS02855 (ACN5ZK_02855) - 511304..511696 (-) 393 WP_096077848.1 UvrB/UvrC motif-containing protein -
  ACN5ZK_RS02860 (ACN5ZK_02860) - 511708..512169 (-) 462 WP_096077847.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50275.95 Da        Isoelectric Point: 7.4857

>NTDB_id=1106306 ACN5ZK_RS02840 WP_419743956.1 506354..507715(-) (radA) [Macrococcoides bohemicum strain HLJ23]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKTAIHQQDSNSKVEKLKNITKESVPRDHTQMGELDR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVCAMLSQRHPVLYISGEESVRQTKLRADRLKEDAGELDVYAETNLQIIHETV
KKMQPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMRNTGLTEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVSPTSFHNP
RRMATGIDHNRLTLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSIIISIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNINEALKLAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1106306 ACN5ZK_RS02840 WP_419743956.1 506354..507715(-) (radA) [Macrococcoides bohemicum strain HLJ23]
TTGGCTAAAGTGAAATCAACTTTTGAATGTATGGCCTGTGGTTATCAGTCCCCAAAATGGATGGGTAAATGTCCGAATTG
TGGCGCCTGGAATCAGATGGAAGAAGTCATCGAACATAAACAAAAAGGACCAAAAACAGCAATACATCAGCAAGATTCAA
ATTCTAAAGTAGAAAAATTAAAAAATATAACGAAAGAAAGTGTGCCAAGAGACCATACGCAGATGGGAGAACTTGACCGT
GTATTAGGTGGCGGTATTGTTCCTGGCTCACTCGTGCTCATTGGTGGAGATCCAGGTATCGGAAAGTCAACATTGTTACT
ACAAGTGTGTGCGATGTTGTCACAACGTCATCCCGTACTTTATATATCAGGTGAGGAATCAGTAAGACAAACAAAACTCC
GTGCAGATCGCTTAAAGGAAGATGCCGGAGAGTTAGATGTGTATGCGGAGACAAATCTTCAAATCATACATGAAACCGTG
AAGAAGATGCAGCCGAAGTTTTTAGTGATTGACTCTATTCAAACGATTTTTCATCCGGAAGTAACGAGCGCACCAGGTTC
AGTATCTCAAGTGCGTGAATGTACGCAGGAGTTAATGCGTATTGCAAAGCAGATGAATATTGCGACGTTTATCGTCGGTC
ACGTTACAAAAGAAGGGCAAATCGCAGGACCACGTTTACTTGAACATATGGTAGATACTGTACTTTATTTTGAAGGCGAT
ACACATCATAGTTACCGTATTTTACGTGCCGTGAAAAACCGTTTCGGTTCTACAAATGAAATGGGTATATTTGAAATGCG
CAATACTGGCCTTACAGAAGTATTAAACCCGAGTGAAATGTTCTTAGAAGAACGTACGAAGAATGTAGCCGGTTCTACGA
TTGTTGCCACAATGGAAGGCACGCGTCCACTCCTTGTTGAAGTTCAATCATTAGTGTCACCGACATCATTTCATAACCCT
AGACGTATGGCGACAGGTATTGACCATAACCGTTTAACACTGTTAATGGCAGTACTAGAGAAGAAACAAGGTTATCTGTT
ACAGCAACAGGATGCCTATGTCAAAGTAGCAGGTGGCGTGAAATTAGATGAACCTGCTGTTGATTTAAGTATTATTATTA
GCATTGCTTCAAGCTATAATGATAAACCAACCCGTGGCGATGACTGCTTTATCGGAGAAGTAGGTTTGACTGGAGAAGTA
AGACGTGTTGCGCGTATTGAACAACGTGTGCAGGAAGCTGAAAAACTTGGATTCAAACGTGTCATTATTCCAAAGAATAA
TATCGGTGGCTGGGATTTCCCGGGGAATATCGAAGTGATTGGTGTAACAAATATAAACGAAGCATTAAAGCTTGCATTTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.202

100

0.687
  radA Streptococcus pneumoniae Rx1

62.031

100

0.62
  radA Streptococcus pneumoniae D39

62.031

100

0.62
  radA Streptococcus pneumoniae R6

62.031

100

0.62
  radA Streptococcus pneumoniae TIGR4

62.031

100

0.62
  radA Streptococcus mitis NCTC 12261

62.031

100

0.62
  radA Streptococcus mitis SK321

62.031

100

0.62

Multiple sequence alignment