Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   ACN5ZK_RS02590 Genome accession   NZ_CP183824
Coordinates   460828..461781 (-) Length   317 a.a.
NCBI ID   WP_096077898.1    Uniprot ID   A0A4V3B1E1
Organism   Macrococcoides bohemicum strain HLJ23     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 455828..466781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN5ZK_RS02565 (ACN5ZK_02565) hemQ 455934..456683 (+) 750 WP_419743946.1 hydrogen peroxide-dependent heme synthase -
  ACN5ZK_RS02570 (ACN5ZK_02570) - 457208..457738 (-) 531 WP_419743947.1 hypothetical protein -
  ACN5ZK_RS02575 (ACN5ZK_02575) - 457950..458987 (-) 1038 WP_096077901.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  ACN5ZK_RS02580 (ACN5ZK_02580) - 459083..459889 (-) 807 WP_096077900.1 ABC transporter ATP-binding protein -
  ACN5ZK_RS02585 (ACN5ZK_02585) - 459882..460835 (-) 954 WP_096077899.1 iron chelate uptake ABC transporter family permease subunit -
  ACN5ZK_RS02590 (ACN5ZK_02590) ceuB 460828..461781 (-) 954 WP_096077898.1 ABC transporter permease Machinery gene
  ACN5ZK_RS02595 (ACN5ZK_02595) - 461981..463330 (+) 1350 WP_133354217.1 APC family permease -
  ACN5ZK_RS02600 (ACN5ZK_02600) - 463397..463522 (+) 126 WP_257790030.1 hypothetical protein -
  ACN5ZK_RS02605 (ACN5ZK_02605) - 463562..463924 (-) 363 WP_203545854.1 DUF423 domain-containing protein -
  ACN5ZK_RS02610 (ACN5ZK_02610) - 463943..464251 (-) 309 WP_188018562.1 DUF5327 family protein -
  ACN5ZK_RS02615 (ACN5ZK_02615) - 464248..464907 (-) 660 WP_203545855.1 uracil-DNA glycosylase -
  ACN5ZK_RS02620 (ACN5ZK_02620) thiD 465014..465844 (+) 831 WP_096077893.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACN5ZK_RS02625 (ACN5ZK_02625) - 465969..466325 (+) 357 WP_096077892.1 YojF family protein -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 34909.52 Da        Isoelectric Point: 10.4858

>NTDB_id=1106305 ACN5ZK_RS02590 WP_096077898.1 460828..461781(-) (ceuB) [Macrococcoides bohemicum strain HLJ23]
MKMMYGLIALVLLSIVSIFVGVIDISPQHLMHLSDNQKNILMNSRFPRTLSIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLISMIFFAQAPLLVKLGFSITTAILGTFMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAM
QSISNFFVGDFSMITKGRYEVLYIIIPMVIIMYFFAHHFTIVGMGESFSKNLGISYNKIMNLGVVIAAVVSATVVVTIGV
LPFLGLIVPNIVGLFVGDHMNKALPYTALLGAIIVMIADIFSRIIIFPYEIPIGLTLGILGSVVFMIILLKRRKEYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1106305 ACN5ZK_RS02590 WP_096077898.1 460828..461781(-) (ceuB) [Macrococcoides bohemicum strain HLJ23]
ATGAAAATGATGTATGGTCTTATCGCATTAGTATTATTATCGATTGTTTCGATATTTGTAGGGGTGATTGATATTTCGCC
GCAACATTTAATGCATCTATCAGACAATCAGAAGAATATTTTAATGAATAGTCGTTTCCCGAGGACGCTATCTATCATAT
TGGCAGGTGTGGCATTAAGTGTTGCAGGGTTACTGATGCAGCAGCTTACACGTAATAAATTCGTCTCGCCGACGACAGCA
GGTACAATGGATTTTGCGAAGTTTGGTGTATTGATATCAATGATTTTCTTTGCGCAAGCGCCACTATTAGTAAAACTTGG
ATTTAGTATTACAACTGCTATTCTCGGAACATTTATGTTTATGTGGATTGTTAATCGTATTAAGTTTAAAGATGCGATAT
TCATTCCGCTTGTCGGATTGATGCTGGGTAATATCGTTTCCAGCTTAGCAACATTTATGGCATTAAGATTTAATGCAATG
CAAAGTATTTCTAACTTCTTTGTCGGTGATTTTTCGATGATTACGAAAGGACGTTATGAAGTGCTGTATATCATCATTCC
GATGGTTATTATTATGTACTTCTTTGCACATCACTTTACGATTGTCGGAATGGGAGAGTCGTTTAGTAAGAACTTAGGTA
TTTCATACAATAAGATAATGAATCTCGGCGTAGTTATTGCGGCAGTTGTTTCAGCCACTGTCGTCGTAACAATCGGTGTA
TTACCATTCCTGGGATTGATTGTACCGAATATTGTTGGGCTTTTTGTCGGGGATCATATGAATAAAGCGTTACCGTACAC
TGCGCTTCTTGGAGCGATTATTGTAATGATTGCTGATATATTCAGCCGAATTATTATCTTTCCATACGAAATACCGATAG
GGCTAACGCTAGGTATTTTAGGGAGTGTTGTATTTATGATTATCCTTCTGAAAAGGAGGAAAGAATATGCCTAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4V3B1E1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.679

98.423

0.489


Multiple sequence alignment