Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN23B_RS19215 Genome accession   NZ_CP183817
Coordinates   4620194..4621717 (+) Length   507 a.a.
NCBI ID   WP_010997964.1    Uniprot ID   Q8YQK0
Organism   Anabaena sp. FACHB-709     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4615194..4626717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN23B_RS19190 (ACN23B_19175) - 4616235..4617005 (+) 771 WP_010997959.1 hypothetical protein -
  ACN23B_RS19195 (ACN23B_19180) - 4617190..4618035 (-) 846 WP_010997960.1 DUF4351 domain-containing protein -
  ACN23B_RS19200 (ACN23B_19185) - 4618047..4618565 (-) 519 WP_010997961.1 DUF456 domain-containing protein -
  ACN23B_RS19205 (ACN23B_19190) - 4618587..4619228 (-) 642 WP_010997962.1 cofactor assembly of complex C subunit B -
  ACN23B_RS19210 (ACN23B_19195) rpaB 4619289..4620017 (-) 729 WP_010997963.1 response regulator transcription factor RpaB -
  ACN23B_RS19215 (ACN23B_19200) radA 4620194..4621717 (+) 1524 WP_010997964.1 DNA repair protein RadA Machinery gene
  ACN23B_RS19220 (ACN23B_19205) - 4621818..4622618 (+) 801 WP_010997965.1 Uma2 family endonuclease -
  ACN23B_RS19225 (ACN23B_19210) - 4622712..4623605 (+) 894 WP_010997966.1 SDH family Clp fold serine proteinase -
  ACN23B_RS19230 (ACN23B_19215) - 4623636..4624361 (-) 726 WP_010997967.1 peptidoglycan-binding protein -
  ACN23B_RS19235 (ACN23B_19220) - 4624615..4626033 (+) 1419 WP_010997968.1 hypothetical protein -
  ACN23B_RS19240 (ACN23B_19225) rimP 4626197..4626658 (+) 462 WP_010997969.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54513.33 Da        Isoelectric Point: 4.8227

>NTDB_id=1106295 ACN23B_RS19215 WP_010997964.1 4620194..4621717(+) (radA) [Anabaena sp. FACHB-709]
MAKPKTFYICNECGAESPQWFGKCPACGTYNSLEEQITIQSSVDVPKGGVSGWHASQNNGKAPVKPPKARASLTFDQITD
RQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQRYRILYVTGEESGQQVKLRASRLGVAKCLS
VVGDDQQEESEQTSPVSIAESVGADLYVLPETDLEEILREVDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALM
KVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVANGLREVPNPSE
LFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAGG
LNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKKAIVPKGQKFPDFDIEIIPV
AKVIDAIIAAIPHQELTEEDFNPDEDE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1106295 ACN23B_RS19215 WP_010997964.1 4620194..4621717(+) (radA) [Anabaena sp. FACHB-709]
ATGGCAAAGCCCAAAACTTTTTACATTTGTAACGAATGTGGAGCAGAATCTCCCCAATGGTTTGGTAAGTGTCCAGCTTG
TGGTACTTACAATTCCTTAGAAGAACAGATTACCATTCAATCTTCCGTAGATGTACCTAAGGGGGGAGTTAGTGGTTGGC
ACGCTTCTCAGAATAATGGCAAAGCACCTGTTAAGCCGCCAAAAGCACGAGCTTCTTTAACATTTGACCAAATTACCGAT
CGCCAAATTGCACGTTGGGAGTCTGGCTATGGGGAACTGGATCGGGTACTTGGTGGTGGTGTGGTTCCGGGTTCGATGGT
GTTGATTGGTGGCGATCCTGGTATCGGTAAATCTACTTTATTACTACAAGTTTCAAATCAATTGGCGCAGAGATATCGGA
TTCTCTATGTAACTGGCGAAGAATCTGGGCAACAGGTAAAGTTAAGAGCTTCTCGCTTAGGTGTGGCAAAATGCCTAAGT
GTTGTAGGAGATGATCAGCAAGAAGAGTCAGAACAGACGTCTCCAGTATCAATAGCTGAAAGTGTAGGTGCAGATTTATA
TGTTCTTCCAGAGACAGATTTAGAAGAAATATTACGAGAGGTGGATTCTCTCAAGCCCAATGTGGCAGTGATTGATAGTA
TTCAAACCGTGTTTTTTCCCGCCCTGACCTCTGCGCCTGGTTCAGTCGCCCAAGTCAGGGAATGTACAGCCGCCTTAATG
AAAGTGGCAAAACACGAAGACATCACCATGTTAATTGTCGGACACGTCACCAAAGAAGGTGCGATCGCCGGGCCAAAAGT
TTTAGAACACCTAGTAGATACAGTACTCTATTTTGAAGGCGATCGCTTTGCTTCTCATCGGTTATTACGTACAGTTAAAA
ACCGCTTCGGTGCAACTCACGAAATCGGTATCTTTGAAATGGTGGCGAATGGATTGCGAGAAGTACCTAATCCCAGTGAG
CTATTTCTAGGTAATCGTGATGATCCTGCTCCTGGTACAGCCATTGTTGTGGCTTGTGAAGGTACACGCCCTATTGTCGT
AGAATTACAAGCCTTAGTCAGTCCCACCAGCTACCCCTCTCCCCGCCGTGCAGGTACAGGTATAGACTATAACCGATTAG
TCCAAATTCTCGCTGTGTTAGAAAAACGCGTGGGAATCCCCATGTCCAAATTAGATTCTTACGTCGCTTCGGCTGGAGGA
TTAAACGTAGAAGAACCAGCCGTAGATTTAGGGATAGCCATTGCTATCGTTGCCAGTTTCCGCGATCGCATTGTTGATCC
CGGTACAGTCTTGATTGGGGAAGTCGGCTTGGGTGGACAAGTGCGATCGGTTTCCCAGATGGAACTCCGATTAAAAGAAG
CAGCTAAACTGGGATTCAAGAAAGCGATCGTTCCTAAAGGTCAAAAATTTCCCGACTTTGACATAGAAATTATCCCAGTT
GCCAAAGTCATAGATGCAATTATTGCCGCCATCCCTCACCAAGAACTAACAGAAGAGGACTTCAACCCAGATGAGGATGA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(401-466)

KaiC (ATPase)

(89-295)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8YQK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.61

97.041

0.491
  radA Streptococcus pneumoniae Rx1

45.825

96.844

0.444
  radA Streptococcus pneumoniae D39

45.825

96.844

0.444
  radA Streptococcus pneumoniae R6

45.825

96.844

0.444
  radA Streptococcus pneumoniae TIGR4

45.825

96.844

0.444
  radA Streptococcus mitis SK321

45.714

96.647

0.442
  radA Streptococcus mitis NCTC 12261

45.714

96.647

0.442

Multiple sequence alignment