Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN6I1_RS14980 Genome accession   NZ_CP183813
Coordinates   3139898..3141277 (+) Length   459 a.a.
NCBI ID   WP_025162202.1    Uniprot ID   A0A1X2JEA2
Organism   Paraclostridium dentum strain IIB4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3134898..3146277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6I1_RS14970 - 3135328..3137262 (+) 1935 WP_419742319.1 elongation factor G -
  ACN6I1_RS14975 - 3137392..3139692 (+) 2301 WP_419742320.1 ATP-dependent Clp protease ATP-binding subunit -
  ACN6I1_RS14980 radA 3139898..3141277 (+) 1380 WP_025162202.1 DNA repair protein RadA Machinery gene
  ACN6I1_RS14985 disA 3141279..3142349 (+) 1071 WP_148552198.1 DNA integrity scanning diadenylate cyclase DisA -
  ACN6I1_RS14990 - 3142448..3143536 (+) 1089 WP_021431481.1 PIN/TRAM domain-containing protein -
  ACN6I1_RS14995 ispD 3143672..3144352 (+) 681 WP_419742321.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACN6I1_RS15000 ispF 3144369..3144848 (+) 480 WP_021428178.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50153.14 Da        Isoelectric Point: 8.5410

>NTDB_id=1106280 ACN6I1_RS14980 WP_025162202.1 3139898..3141277(+) (radA) [Paraclostridium dentum strain IIB4]
MAKIKTKYVCQECGYENSKWLGKCPECSKWNTFVEEIEEKTSKSNKEVFVIDKSSSRPLNINSIETIKEQRFSTCINELD
RVLGGGVVKGSLVLVGGDPGIGKSTLLIQVSSNVANSGKKVLYISGEESASQIKMRAQRLGIKSDNLYIFAENNLSIIEA
HLESVNPDLIILDSIQTVFSPEITSAPGTVSQIKEGTSRFMKISKKMGISTFVVGHVTKEGALAGPKVLEHMVDTVLYFE
GERFNTYRLIRAVKNRFGSTNELGVFEMREVGLVELENPSKILIAEKPKDVAGSIIISTVEGTRPMLLELQALASPTSFG
IPKRTATGVDYNRVSLLMAVLEKRVGMQIQNQDIYINVVGGIKINEPSIDLGIVMAIASSFRNIPIDGNVAITGEVGLTG
EVRAVSFIEKRIAECKKLGFTKIVIPKSNYEAVKDVKGIDICPVDSVRQAINMVLGGNR

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1106280 ACN6I1_RS14980 WP_025162202.1 3139898..3141277(+) (radA) [Paraclostridium dentum strain IIB4]
ATGGCTAAAATAAAAACTAAATATGTGTGTCAAGAATGTGGGTATGAGAATAGTAAATGGCTAGGAAAATGTCCAGAATG
TAGCAAATGGAATACATTTGTCGAAGAAATAGAAGAGAAAACTTCAAAATCAAATAAAGAAGTTTTTGTTATAGATAAAT
CATCATCTAGACCTTTAAATATAAACTCGATAGAAACTATAAAAGAGCAAAGATTTTCAACTTGCATAAACGAGTTAGAT
AGAGTTTTAGGTGGAGGAGTAGTTAAAGGATCATTAGTTTTAGTCGGAGGGGATCCAGGTATTGGTAAGTCAACATTACT
TATACAAGTTTCAAGTAATGTTGCTAATAGCGGTAAAAAAGTTTTATACATATCAGGAGAAGAATCTGCATCTCAAATAA
AAATGAGGGCTCAAAGATTAGGAATAAAGTCCGATAATTTATATATATTTGCTGAAAATAACTTGAGTATAATAGAAGCT
CACTTAGAAAGTGTAAATCCAGACTTAATTATATTAGACTCTATACAAACTGTTTTTAGTCCTGAAATTACATCTGCTCC
AGGTACTGTAAGCCAGATAAAGGAAGGTACTTCGAGATTTATGAAAATTTCTAAAAAAATGGGTATATCAACCTTTGTAG
TTGGACATGTAACTAAAGAAGGTGCACTAGCAGGACCGAAGGTATTAGAACATATGGTAGACACTGTATTATATTTTGAA
GGAGAACGATTCAATACGTATAGATTGATAAGAGCTGTAAAAAATAGATTTGGGTCTACAAATGAATTAGGTGTATTTGA
GATGCGAGAAGTAGGATTAGTTGAGTTAGAAAATCCATCTAAAATACTTATAGCCGAAAAACCAAAAGATGTAGCAGGGT
CTATAATTATATCTACAGTAGAAGGTACTAGACCAATGCTTTTAGAATTGCAAGCACTAGCATCACCTACTAGTTTTGGG
ATTCCTAAAAGAACGGCTACAGGAGTTGATTATAATAGAGTATCATTACTTATGGCTGTTCTTGAAAAACGTGTTGGTAT
GCAAATACAAAACCAGGATATATACATAAATGTTGTTGGAGGAATAAAAATTAATGAGCCATCTATAGATCTAGGAATAG
TTATGGCTATAGCTTCTAGTTTTAGAAATATACCTATAGATGGGAATGTAGCAATTACAGGAGAAGTTGGATTAACAGGA
GAAGTAAGAGCGGTGAGCTTTATAGAAAAGAGAATCGCAGAATGTAAGAAGCTAGGTTTCACTAAAATCGTTATTCCAAA
GAGCAATTATGAGGCTGTTAAAGATGTAAAAGGGATAGATATATGTCCAGTGGATAGTGTAAGACAAGCTATAAATATGG
TATTAGGAGGAAATAGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-221)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(349-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X2JEA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.205

99.782

0.571
  radA Streptococcus pneumoniae Rx1

52.193

99.346

0.519
  radA Streptococcus pneumoniae D39

52.193

99.346

0.519
  radA Streptococcus pneumoniae R6

52.193

99.346

0.519
  radA Streptococcus pneumoniae TIGR4

52.193

99.346

0.519
  radA Streptococcus mitis NCTC 12261

51.974

99.346

0.516
  radA Streptococcus mitis SK321

51.974

99.346

0.516

Multiple sequence alignment