Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HW11_RS04275 Genome accession   NZ_CP008873
Coordinates   920673..921038 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain F9670     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 915673..926038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW11_RS04260 (HW11_04295) pilK 917018..917893 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  HW11_RS04265 (HW11_04300) pilJ 917954..920002 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  HW11_RS04270 (HW11_04305) - 920087..920622 (-) 536 Protein_847 chemotaxis protein CheW -
  HW11_RS04275 (HW11_04310) pilH 920673..921038 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  HW11_RS04280 (HW11_04315) pilG 921085..921492 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  HW11_RS04285 (HW11_04320) gshB 921747..922700 (+) 954 WP_003100943.1 glutathione synthase -
  HW11_RS04290 (HW11_04325) - 922846..923739 (+) 894 WP_003160914.1 energy transducer TonB -
  HW11_RS04295 (HW11_04330) - 923788..924357 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  HW11_RS04300 (HW11_04335) ruvX 924357..924791 (+) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  HW11_RS04305 (HW11_04340) pyrR 924903..925415 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=110623 HW11_RS04275 WP_003084587.1 920673..921038(-) (pilH) [Pseudomonas aeruginosa strain F9670]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=110623 HW11_RS04275 WP_003084587.1 920673..921038(-) (pilH) [Pseudomonas aeruginosa strain F9670]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364