Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   V3C22_RS06385 Genome accession   NZ_CP183775
Coordinates   1314960..1315853 (+) Length   297 a.a.
NCBI ID   WP_002272311.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309960..1320853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS06365 (V3C22_06365) - 1311923..1312051 (-) 129 WP_002262718.1 hypothetical protein -
  V3C22_RS06370 (V3C22_06370) - 1312086..1312316 (-) 231 WP_024783549.1 hypothetical protein -
  V3C22_RS06375 (V3C22_06375) gbpC 1312446..1314197 (-) 1752 WP_002302226.1 glucan-binding protein GbpC -
  V3C22_RS06380 (V3C22_06380) - 1314360..1314644 (-) 285 WP_032538906.1 helix-turn-helix transcriptional regulator -
  V3C22_RS06385 (V3C22_06385) irvR 1314960..1315853 (+) 894 WP_002272311.1 LexA family transcriptional regulator IrvR Regulator
  V3C22_RS06390 (V3C22_06390) - 1316376..1317242 (-) 867 WP_002280229.1 NADPH-dependent oxidoreductase -
  V3C22_RS06395 (V3C22_06395) - 1317350..1318228 (-) 879 WP_002264921.1 helix-turn-helix transcriptional regulator -
  V3C22_RS06400 (V3C22_06400) - 1318352..1319842 (+) 1491 WP_226718754.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33625.32 Da        Isoelectric Point: 6.7036

>NTDB_id=1105950 V3C22_RS06385 WP_002272311.1 1314960..1315853(+) (irvR) [Streptococcus mutans strain Xc]
MGRGKLTPQDLEAMKAISANLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKSLPKIGNIQKIADYFGLQKSDIDPRFA
SKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDETTDDKVADKSNHTQYQKVVDSFIAKELNDQTI
IHWDNVIKAKDLYQTFGRQYENIQIYGEVSAGTGIWVGHEKQETIKYPIPIPEHDIALTVNGNSMEPLFYNGDVIFVKKT
KAIHHGQIIVVIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKEDDTIEVIGTVIT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1105950 V3C22_RS06385 WP_002272311.1 1314960..1315853(+) (irvR) [Streptococcus mutans strain Xc]
ATGGGACGCGGTAAATTAACTCCACAAGATTTAGAAGCAATGAAGGCTATTTCTGCCAATCTTCAAAGACTTCTAGCTGA
GAGCGGAATGAAACAATCTCACTTAGCCACTATCCTTAACATTCCTACAAGTAGTCTTAATGAATATGTTAAAGGAAAGA
GTTTGCCAAAAATAGGGAATATTCAAAAAATCGCAGATTACTTTGGTCTCCAAAAATCCGATATTGACCCTAGATTTGCA
AGTAAAAAGGACTCTTCTACTCTTGATAAAATTAATCATATTGCCAAACAATTAGAAATGAAGAGACAGATAAAAGTCTT
AGATTTCTGTTACCAACAATCAAAAGAACAAGATGAAACAGCAAGCTTATCTGCCAGTGATGAAACGACTGATGATAAAG
TTGCTGACAAATCAAATCATACGCAGTATCAAAAGGTTGTTGATTCTTTTATTGCCAAAGAATTAAACGATCAGACAATT
ATTCATTGGGATAATGTGATAAAAGCTAAGGATTTGTATCAAACCTTTGGACGTCAATACGAAAACATTCAGATTTATGG
TGAAGTTTCAGCTGGTACTGGTATCTGGGTTGGACATGAAAAACAAGAAACCATTAAATACCCAATACCAATTCCAGAAC
ATGATATTGCTCTTACTGTCAATGGTAATAGTATGGAACCTTTATTTTACAACGGTGACGTTATTTTTGTTAAAAAGACT
AAAGCTATCCATCACGGACAAATTATCGTTGTTATTGTAAATAATGAGGCATATGTCAAAAAACTCTACCGAAAAAACAA
AGAAATTCGACTCATCTCATTAAATCCAGATTATGATGACATCATTTTAAAAGAAGATGATACAATTGAAGTCATCGGAA
CGGTCATTACCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(22-70)

Peptidase S24-like (Peptidase_S24)

(184-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

99.327

100

0.993

Multiple sequence alignment