Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   V3C22_RS02555 Genome accession   NZ_CP183775
Coordinates   521061..522101 (+) Length   346 a.a.
NCBI ID   WP_002264420.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 516061..527101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS02525 (V3C22_02525) - 516334..516537 (+) 204 WP_002270141.1 hypothetical protein -
  V3C22_RS02530 (V3C22_02530) - 516578..516823 (+) 246 WP_002268902.1 hypothetical protein -
  V3C22_RS02535 (V3C22_02535) - 517019..517585 (+) 567 WP_002267335.1 TetR/AcrR family transcriptional regulator -
  V3C22_RS02540 (V3C22_02540) - 517706..519481 (+) 1776 WP_226708848.1 oleate hydratase -
  V3C22_RS02545 (V3C22_02545) rsmD 520054..520593 (+) 540 WP_002267337.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V3C22_RS02550 (V3C22_02550) coaD 520583..521083 (+) 501 WP_002284962.1 pantetheine-phosphate adenylyltransferase -
  V3C22_RS02555 (V3C22_02555) sepM 521061..522101 (+) 1041 WP_002264420.1 S16 family serine protease SepM Regulator
  V3C22_RS02560 (V3C22_02560) - 522174..523505 (+) 1332 WP_226708849.1 metallophosphoesterase -
  V3C22_RS02565 (V3C22_02565) - 523502..524050 (+) 549 WP_002268848.1 YutD family protein -
  V3C22_RS02570 (V3C22_02570) rlmN 524047..525132 (+) 1086 WP_002295558.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  V3C22_RS02575 (V3C22_02575) - 525132..525668 (+) 537 WP_002295559.1 VanZ family protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37952.90 Da        Isoelectric Point: 10.1655

>NTDB_id=1105933 V3C22_RS02555 WP_002264420.1 521061..522101(+) (sepM) [Streptococcus mutans strain Xc]
MKTNKKFKWWLISGISLILLLMVFFFPLPYYLEMPGGAYDIRSVVTVNHKEDKEKGSYNFVAVSLSKATPIQVLYAWLTP
FTEITSAKETTGGVSDADYMRINQFYMETSQNGAIYKALSLAHKKASFNYMGVYVLQVSKNSTFKGVLNIADTVTGVNDK
TFHSSKELIKYVSGLKLGSKVSVQYTSENKKKTAKGKVIKLSNGKNGIGIGLVDHTKVTSDDKIEFSTNGIGGPSAGLMF
TLDIYDQLVKEDLRKGRIIAGTGTIGEDGSVGDIGGADMKVAAADRINADIFFVPNNPVSKATLKKNPKALTNYQEAKQA
AKKLGTKMKIVPVKNVQEAIDYLRKH

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1105933 V3C22_RS02555 WP_002264420.1 521061..522101(+) (sepM) [Streptococcus mutans strain Xc]
GTGAAAACAAACAAAAAATTTAAATGGTGGCTAATCAGCGGTATCAGTCTTATTTTGCTTTTAATGGTATTCTTTTTTCC
TCTTCCTTACTATTTAGAAATGCCCGGCGGAGCCTATGATATTCGTTCTGTTGTGACGGTTAATCATAAAGAAGATAAAG
AGAAAGGATCTTATAATTTTGTAGCTGTCTCTCTTAGTAAGGCAACCCCCATACAAGTCCTCTATGCTTGGCTGACCCCT
TTTACAGAAATTACCAGTGCCAAGGAAACAACTGGTGGTGTTAGTGATGCGGATTATATGAGGATTAATCAGTTTTATAT
GGAAACCTCACAAAATGGAGCTATCTATAAAGCTCTTTCTTTAGCTCATAAAAAGGCAAGCTTTAATTATATGGGTGTTT
ATGTTTTGCAGGTTAGTAAGAATTCAACATTCAAGGGTGTTTTAAATATTGCTGATACTGTAACAGGCGTTAATGACAAG
ACCTTTCATAGTTCAAAAGAATTGATTAAATATGTGTCTGGACTGAAATTAGGCAGCAAGGTCAGTGTTCAATATACTTC
TGAAAATAAGAAGAAAACAGCCAAGGGCAAAGTTATTAAATTGTCAAATGGCAAAAATGGTATTGGCATTGGCCTGGTTG
ATCATACCAAGGTCACTTCTGATGATAAAATCGAATTTAGCACAAATGGTATTGGAGGGCCAAGTGCCGGTCTCATGTTT
ACCCTTGATATTTACGATCAACTAGTGAAAGAGGACTTACGTAAGGGTCGTATTATTGCAGGTACTGGTACTATTGGAGA
AGACGGGTCTGTTGGGGATATTGGCGGTGCTGATATGAAAGTGGCAGCAGCAGATAGGATTAATGCAGATATCTTTTTTG
TTCCCAATAATCCTGTAAGTAAGGCAACTTTGAAAAAAAATCCCAAAGCTCTCACTAATTATCAAGAAGCTAAGCAGGCT
GCTAAAAAATTAGGCACTAAGATGAAGATTGTCCCTGTTAAAAATGTGCAGGAGGCTATTGATTACCTAAGAAAACACTA
A

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(131-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

99.711

100

0.997

Multiple sequence alignment