Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V3C22_RS01620 Genome accession   NZ_CP183775
Coordinates   337455..338855 (+) Length   466 a.a.
NCBI ID   WP_002265009.1    Uniprot ID   A0AAX1K1T7
Organism   Streptococcus mutans strain Xc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 332455..343855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS01590 (V3C22_01590) - 333093..333629 (+) 537 WP_019312483.1 5-formyltetrahydrofolate cyclo-ligase -
  V3C22_RS01595 (V3C22_01595) - 333616..334287 (+) 672 WP_002286625.1 rhomboid family intramembrane serine protease -
  V3C22_RS01600 (V3C22_01600) galU 334309..335229 (-) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  V3C22_RS01605 (V3C22_01605) - 335231..336250 (-) 1020 WP_226706841.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  V3C22_RS01610 (V3C22_01610) - 336574..337017 (+) 444 WP_002265011.1 dUTP diphosphatase -
  V3C22_RS01615 (V3C22_01615) - 337027..337497 (+) 471 WP_226706844.1 isochorismatase family protein -
  V3C22_RS01620 (V3C22_01620) radA 337455..338855 (+) 1401 WP_002265009.1 DNA repair protein RadA Machinery gene
  V3C22_RS01625 (V3C22_01625) - 338945..339439 (+) 495 WP_002262519.1 beta-class carbonic anhydrase -
  V3C22_RS01630 (V3C22_01630) - 339628..340341 (+) 714 WP_002295098.1 TIGR00266 family protein -
  V3C22_RS01635 (V3C22_01635) gltX 340736..342193 (+) 1458 WP_002265788.1 glutamate--tRNA ligase -
  V3C22_RS01640 (V3C22_01640) - 342309..342833 (+) 525 WP_002268868.1 transcription repressor NadR -
  V3C22_RS01645 (V3C22_01645) - 342900..343448 (+) 549 WP_002262515.1 hypothetical protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51135.67 Da        Isoelectric Point: 7.1359

>NTDB_id=1105925 V3C22_RS01620 WP_002265009.1 337455..338855(+) (radA) [Streptococcus mutans strain Xc]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=1105925 V3C22_RS01620 WP_002265009.1 337455..338855(+) (radA) [Streptococcus mutans strain Xc]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAATATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGATCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGGCCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.159

96.996

0.865
  radA Streptococcus pneumoniae D39

89.159

96.996

0.865
  radA Streptococcus pneumoniae R6

89.159

96.996

0.865
  radA Streptococcus pneumoniae TIGR4

89.159

96.996

0.865
  radA Streptococcus mitis SK321

89.159

96.996

0.865
  radA Streptococcus mitis NCTC 12261

88.938

96.996

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

97.21

0.603

Multiple sequence alignment