Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACN2EP_RS03725 Genome accession   NZ_CP183411
Coordinates   736368..738218 (-) Length   616 a.a.
NCBI ID   WP_152054738.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain BNI-4100-2     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 731368..743218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2EP_RS03710 (ACN2EP_03710) - 731793..732920 (+) 1128 WP_237962247.1 iron-containing alcohol dehydrogenase -
  ACN2EP_RS03715 (ACN2EP_03715) - 732965..735217 (-) 2253 WP_237962248.1 methyl-accepting chemotaxis protein -
  ACN2EP_RS03720 (ACN2EP_03720) - 735343..736365 (-) 1023 WP_237962249.1 alanine racemase -
  ACN2EP_RS03725 (ACN2EP_03725) uvrC 736368..738218 (-) 1851 WP_152054738.1 excinuclease ABC subunit UvrC Machinery gene
  ACN2EP_RS03730 (ACN2EP_03730) - 738374..740767 (+) 2394 WP_301346335.1 methyl-accepting chemotaxis protein -
  ACN2EP_RS03735 (ACN2EP_03735) - 741122..743125 (+) 2004 WP_157277631.1 HAMP domain-containing methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72238.37 Da        Isoelectric Point: 9.0416

>NTDB_id=1105622 ACN2EP_RS03725 WP_152054738.1 736368..738218(-) (uvrC) [Aliarcobacter butzleri strain BNI-4100-2]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNENLNAFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1105622 ACN2EP_RS03725 WP_152054738.1 736368..738218(-) (uvrC) [Aliarcobacter butzleri strain BNI-4100-2]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCGGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTGCAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTAGAAAGTTGCGAGTGGATTGTTGTACCAAATGAACATGATGCT
TTAATTCTTGAAAACTCTTTAATAAAACAATTAAAACCAAAATATAATATTTTGCTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGACTTGATATAACTAGAAGGATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCATTGGTACAAAAGAAATCTTGT
GTAAAAGGTAAAAAAGCCTGTCTTTTCCATCAAATACAAAAATGTTTAGCGCCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGGTTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGGTATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATTGT
AAGAATGTTTTTAAGAGATGGTAAATTAACTTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTGCCAAAAGAGATT
TTGATTGCCCATGAACTTGAAATAACAAATGAATTAGAAGAGTTTTTACATACAAGATTTAATAAAAAAATTAAACTAAT
CAATCCTAAAAAAGATAAAAAAAGAGAAATTGTAAATATAGCTTTAAATAACTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGTTGTTTAATCTTCAAACTCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAATTTAAATGCTTTTGATAAAAA
AGCTTTTAGGCATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAGAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATAGATGGAGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATCATTGCAATAGCAAAAGAAAAAATTGATGCGAAAGCCCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATTAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAACGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.405

97.89

0.513

Multiple sequence alignment