Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACN2EO_RS03755 Genome accession   NZ_CP183410
Coordinates   748473..750323 (-) Length   616 a.a.
NCBI ID   WP_419718126.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain BNI-3140-2     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 743473..755323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2EO_RS03740 (ACN2EO_03740) - 743881..745008 (+) 1128 WP_419718123.1 iron-containing alcohol dehydrogenase -
  ACN2EO_RS03745 (ACN2EO_03745) - 745058..747319 (-) 2262 WP_419718124.1 methyl-accepting chemotaxis protein -
  ACN2EO_RS03750 (ACN2EO_03750) - 747448..748470 (-) 1023 WP_419718125.1 alanine racemase -
  ACN2EO_RS03755 (ACN2EO_03755) uvrC 748473..750323 (-) 1851 WP_419718126.1 excinuclease ABC subunit UvrC Machinery gene
  ACN2EO_RS03760 (ACN2EO_03760) - 750480..752876 (+) 2397 WP_419718127.1 methyl-accepting chemotaxis protein -
  ACN2EO_RS03765 (ACN2EO_03765) - 753231..755234 (+) 2004 WP_419316491.1 HAMP domain-containing methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72251.46 Da        Isoelectric Point: 9.2189

>NTDB_id=1105614 ACN2EO_RS03755 WP_419718126.1 748473..750323(-) (uvrC) [Aliarcobacter butzleri strain BNI-3140-2]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
IKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYKRAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNENLNAFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1105614 ACN2EO_RS03755 WP_419718126.1 748473..750323(-) (uvrC) [Aliarcobacter butzleri strain BNI-3140-2]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCAGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTGGAAAGTTGCGAGTGGATTGTTGTACCAAATGAACACGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATCTTGCTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGGCTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATATTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCATTAGTACAAAAGAAATCTTGT
ATAAAGGGTAAAAAAGCTTGTCTTTTCCATCAAATACAAAAATGTTTAGCACCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGGTTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGGTATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATTGT
AAGAATGTTTTTAAGAGATGGTAAATTGACTTCATCAAGCCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATAAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCGCATGAACTTGAAATTACAAATGAATTAGAAGAGTTTTTGCATACAAGATTTAATAAAAAAATTAAACTAAT
AAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAACTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGCTGTTTAATCTTCAAACTCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAATTTAAATGCTTTTGATAAAAA
AGCTTTTAGGCATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCCGCTCCTGATTTATGGATAATTGATGGTGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATTATTGCAATAGCAAAAGAAAAAATTGATGCAAAAGCCCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAACGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.736

97.89

0.516

Multiple sequence alignment