Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN2EN_RS05865 Genome accession   NZ_CP183409
Coordinates   1184488..1185837 (-) Length   449 a.a.
NCBI ID   WP_419677407.1    Uniprot ID   -
Organism   Aliarcobacter lanthieri strain BNI-3140-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1179488..1190837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2EN_RS05845 (ACN2EN_05845) murJ 1180510..1181832 (-) 1323 WP_034255549.1 murein biosynthesis integral membrane protein MurJ -
  ACN2EN_RS05850 (ACN2EN_05850) - 1181829..1183388 (-) 1560 WP_419677404.1 endonuclease/exonuclease/phosphatase family protein -
  ACN2EN_RS05855 (ACN2EN_05855) - 1183591..1183995 (+) 405 WP_419677405.1 Fur family transcriptional regulator -
  ACN2EN_RS05860 (ACN2EN_05860) ybeY 1184013..1184432 (-) 420 WP_419677406.1 rRNA maturation RNase YbeY -
  ACN2EN_RS05865 (ACN2EN_05865) radA 1184488..1185837 (-) 1350 WP_419677407.1 DNA repair protein RadA Machinery gene
  ACN2EN_RS05870 (ACN2EN_05870) - 1185954..1186514 (+) 561 WP_026804263.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ACN2EN_RS05875 (ACN2EN_05875) - 1186577..1187491 (+) 915 WP_419677408.1 cytochrome-c peroxidase -
  ACN2EN_RS05880 (ACN2EN_05880) - 1187475..1189181 (+) 1707 WP_419677409.1 diguanylate cyclase domain-containing protein -
  ACN2EN_RS05885 (ACN2EN_05885) - 1189190..1190056 (-) 867 WP_026804265.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49467.12 Da        Isoelectric Point: 6.1942

>NTDB_id=1105606 ACN2EN_RS05865 WP_419677407.1 1184488..1185837(-) (radA) [Aliarcobacter lanthieri strain BNI-3140-1]
MAKKKITLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEILKQSIKVSSSTSKAKPITEILQDDVTRFSSFNYEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIANSGKKVLYVSGEESAGQIKLRANRLEANSENLFLLSEIKLEEILD
ELLRIDYEVCIIDSIQTIYSLNLTSAPGSVSQVREITFELMRKAKESNLAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTSEGLISAKDIASKFFDKNKSQSGSSLTVSMEGSRAIILEVQALVCETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKEVYSIDLRLKEAQAQGIKKAIIAQKINLKLDLKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1105606 ACN2EN_RS05865 WP_419677407.1 1184488..1185837(-) (radA) [Aliarcobacter lanthieri strain BNI-3140-1]
ATGGCAAAAAAGAAAATTACACTTTTTGAGTGTCAACACTGTGGAGAACAATCTACAAAATGGCTTGGTAAATGTCCAAA
TTGTGGTTCTTGGGATAGCTTTATAGAATTAAATCAAGAGCAGCAAGAAATTCTAAAACAATCTATAAAAGTTTCTAGTT
CTACTTCAAAAGCAAAACCAATTACAGAAATTTTACAAGATGATGTTACAAGATTTTCATCTTTCAACTATGAATTTGAT
TTAGTTTTAGGTGGAGGGATAGTTCCAGGAAGCCTTACTTTAATAGGAGGAAGTCCAGGAGTTGGTAAATCTACACTTTT
ATTGAAAGTTGCAGGAAGCATTGCAAATAGTGGTAAAAAAGTTCTTTATGTTTCAGGAGAAGAAAGTGCAGGACAGATAA
AATTAAGAGCAAATAGACTTGAAGCAAATAGTGAAAATCTATTTTTATTAAGCGAAATAAAACTTGAAGAAATTTTAGAT
GAACTTCTTAGAATTGATTATGAAGTTTGTATTATTGATTCTATTCAAACAATATATTCTTTAAATCTTACATCAGCACC
AGGAAGTGTATCTCAAGTTAGAGAAATAACATTTGAACTTATGAGAAAAGCAAAAGAATCAAATCTTGCTATGTTTATTA
TTGGGCATATTACAAAAGATGGAAGTATTGCAGGTCCTAGAGTTTTAGAACACATGGTTGATACAGTTTTATATTTTGAA
GGAGAAGCAAGTCGTGAATTAAGAATGCTTCGTGGATTTAAGAATAGATTTGGAAGTACAAGTGAAATTGGTATTTTTGA
AATGACATCAGAAGGCTTAATAAGTGCAAAAGATATCGCTTCAAAATTTTTTGATAAAAATAAATCTCAAAGTGGATCAA
GTTTAACTGTAAGTATGGAAGGAAGTCGTGCGATAATACTGGAAGTTCAAGCATTAGTTTGTGAAACAACATTTCCAAAT
CCAAAAAGAAGTGCAACAGGATTTGATACAAACCGTTTAACTATGCTTTTAGCACTTTTAGAAAAAAAATTGGATTTACC
TTTTAATCACTACGATGTTTTTATAAATATTAGTGGAGGTATAAAAATAAAAGAAAGTAGTGCTGATTTAGCTGTAATTG
CTGCAATAATATCTAGTTTTAGAGATAGGCCAATTTCAAAAGAGTCTGTTTTTATAGGTGAAGTGAGTCTAACAGGAGAA
ATAAAAGAAGTTTATTCTATTGATTTAAGACTAAAAGAGGCTCAAGCACAAGGTATAAAAAAAGCAATAATTGCTCAAAA
AATAAATTTAAAACTAGATTTAAAAACTTTTGCAGTAGATGAAGTCTCAAAGATGATTGAGCTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

AAA domain (AAA_25)

(82-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.797

100

0.483
  radA Streptococcus pneumoniae Rx1

47.797

100

0.483
  radA Streptococcus pneumoniae D39

47.797

100

0.483
  radA Streptococcus pneumoniae TIGR4

47.797

100

0.483
  radA Streptococcus mitis SK321

47.577

100

0.481
  radA Streptococcus mitis NCTC 12261

49.883

95.546

0.477
  radA Bacillus subtilis subsp. subtilis str. 168

49.302

95.768

0.472

Multiple sequence alignment