Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACN2EN_RS04530 Genome accession   NZ_CP183409
Coordinates   905738..907579 (-) Length   613 a.a.
NCBI ID   WP_419678355.1    Uniprot ID   -
Organism   Aliarcobacter lanthieri strain BNI-3140-1     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 900738..912579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2EN_RS04515 (ACN2EN_04515) - 901172..902299 (+) 1128 WP_419678353.1 iron-containing alcohol dehydrogenase -
  ACN2EN_RS04520 (ACN2EN_04520) - 902318..904603 (-) 2286 WP_418179114.1 methyl-accepting chemotaxis protein -
  ACN2EN_RS04525 (ACN2EN_04525) - 904713..905735 (-) 1023 WP_419678354.1 alanine racemase -
  ACN2EN_RS04530 (ACN2EN_04530) uvrC 905738..907579 (-) 1842 WP_419678355.1 excinuclease ABC subunit UvrC Machinery gene
  ACN2EN_RS04535 (ACN2EN_04535) - 907687..910110 (+) 2424 WP_172658491.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71871.20 Da        Isoelectric Point: 9.0040

>NTDB_id=1105604 ACN2EN_RS04530 WP_419678355.1 905738..907579(-) (uvrC) [Aliarcobacter lanthieri strain BNI-3140-1]
MILEEKLKELPNDAGVYQYFDKEGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMICEVENLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNDDFPRLEITRKIQKGKNIKYFGPYSSGARDMLDSIYEIVPLVQKKAC
IKAKKACLFHQIAKCLAPCENKISKEDYSKIVENALEYIYNKTKLISKLKEKMKIYSNDFRFEDAMNLRDRIKTIEKSQI
KTGIDLATNEDIDIFAINSNNKKAVIVRMFLRDGKLTSSNYDFIKINDDLEFDYEEAYKRAIINYYDNELPLLPKEVLIA
HGLLELDDIEEFLYTKFNKKIKIVNPKKDKKREIINIALNNCNELLRLEEAKNQTTIYEELKELFNLKTLPYIIESFDNS
HLMGQATVGAMIVWNEELNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVQSVG
VNLDIIAIAKEKIDAKAHRAKGSAKDIIHYKNSSGEFKNFNLLTSDKRLQFVQRQRDEAHRFVINFHKKQKRTQDKQISL
LQIKGIGEAKIKKLLLYFGEFEKIKNASFEELKSVLNEKDANTILDYFNDFKD

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=1105604 ACN2EN_RS04530 WP_419678355.1 905738..907579(-) (uvrC) [Aliarcobacter lanthieri strain BNI-3140-1]
ATGATTTTAGAAGAGAAATTAAAAGAGTTACCAAATGATGCTGGAGTTTATCAATACTTTGATAAAGAAGGGCATCTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTTAAATCTTACTTTAAATTTACTCCAAAACTATTACCAGCTGATA
AACTAAGCCCTCGTATTTATAAAATGATTTGTGAAGTTGAAAATTTAGAATGGATAGTTGTACCAAATGAACATGATGCA
CTTATATTAGAAAATTCTTTAATAAAACAATTAAAACCAAAATACAATATCTTACTTCGTGATGATAAAACATATCCATA
TATTTTTATAGATTATAATGATGATTTTCCAAGGTTAGAAATAACAAGAAAAATACAAAAAGGGAAAAATATAAAATATT
TTGGTCCTTATTCAAGTGGAGCAAGAGATATGCTAGATAGTATCTATGAAATAGTTCCATTAGTTCAAAAAAAAGCTTGT
ATTAAAGCTAAAAAAGCCTGTTTATTTCACCAAATAGCAAAATGCCTTGCTCCTTGTGAGAATAAAATTTCAAAAGAAGA
TTATTCAAAAATAGTTGAAAATGCTTTAGAATATATCTACAATAAAACTAAACTTATTTCTAAATTAAAAGAAAAAATGA
AAATTTATTCAAATGATTTTCGTTTTGAAGATGCTATGAATTTAAGAGATAGAATAAAAACCATTGAAAAATCTCAAATA
AAAACAGGAATAGATCTCGCTACAAATGAAGATATTGATATTTTTGCAATAAACTCAAATAATAAAAAGGCTGTGATTGT
AAGGATGTTTTTAAGAGATGGAAAACTTACCTCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAATTTGATT
ATGAAGAAGCATATAAAAGAGCGATTATAAACTACTATGACAATGAACTTCCTCTTCTACCAAAAGAAGTTTTAATAGCA
CATGGGCTTTTAGAATTAGATGATATTGAAGAATTTTTATATACAAAATTTAATAAAAAAATAAAAATAGTAAATCCTAA
AAAAGATAAAAAAAGAGAGATTATAAATATTGCACTAAATAACTGTAATGAACTTTTAAGACTTGAAGAAGCAAAAAATC
AAACAACAATTTATGAAGAATTAAAAGAGTTATTTAATCTTAAAACTTTACCATATATTATTGAAAGTTTTGATAACTCT
CACCTTATGGGACAAGCAACAGTTGGTGCAATGATTGTTTGGAATGAAGAATTGAACTCTTTTGATAAAAAAGCTTTTAG
ACACTACAATCTTGAATCCAAAGATGAATATTCACAAATGAGAGAAATGCTAATAAGAAGAGTTGAAAGTTTTGAAAAAA
ATCCAGCACCAGATTTATGGATAATTGATGGAGGGGAAACTTTACTAAAATTAGCTTATGATATAGTTCAAAGTGTTGGA
GTAAATCTTGATATTATAGCTATTGCAAAAGAGAAAATAGATGCAAAAGCACACCGAGCAAAAGGAAGTGCAAAAGATAT
AATTCACTATAAAAATTCAAGTGGTGAATTTAAAAATTTTAATTTACTTACCAGTGATAAAAGACTACAATTCGTTCAAA
GACAAAGAGATGAAGCACACAGATTTGTAATAAATTTCCATAAAAAACAAAAAAGAACTCAAGATAAACAGATATCATTA
CTTCAAATAAAAGGTATTGGTGAAGCAAAGATCAAGAAACTTCTTTTATATTTTGGAGAATTTGAGAAGATAAAAAATGC
TTCTTTTGAAGAGTTAAAAAGTGTGTTAAATGAAAAAGACGCAAACACAATTTTAGATTATTTTAATGATTTCAAGGATT
AA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.254

97.716

0.511

Multiple sequence alignment