Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACN2CY_RS11085 Genome accession   NZ_CP183408
Coordinates   2056761..2058611 (-) Length   616 a.a.
NCBI ID   WP_046998295.1    Uniprot ID   A0A0G9KSN6
Organism   Aliarcobacter butzleri strain BNI-4356     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2051761..2063611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2CY_RS11070 (ACN2CY_11070) - 2052174..2053301 (+) 1128 WP_258271964.1 iron-containing alcohol dehydrogenase -
  ACN2CY_RS11075 (ACN2CY_11075) - 2053350..2055542 (-) 2193 WP_414017246.1 methyl-accepting chemotaxis protein -
  ACN2CY_RS11080 (ACN2CY_11080) - 2055736..2056758 (-) 1023 WP_301367534.1 alanine racemase -
  ACN2CY_RS11085 (ACN2CY_11085) uvrC 2056761..2058611 (-) 1851 WP_046998295.1 excinuclease ABC subunit UvrC Machinery gene
  ACN2CY_RS11090 (ACN2CY_11090) - 2058767..2061163 (+) 2397 WP_419671405.1 methyl-accepting chemotaxis protein -
  ACN2CY_RS11095 (ACN2CY_11095) - 2061223..2061586 (-) 364 Protein_2155 transposase -
  ACN2CY_RS11100 (ACN2CY_11100) - 2061699..2063119 (-) 1421 Protein_2156 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72241.37 Da        Isoelectric Point: 9.0416

>NTDB_id=1105601 ACN2CY_RS11085 WP_046998295.1 2056761..2058611(-) (uvrC) [Aliarcobacter butzleri strain BNI-4356]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNESLNTFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1105601 ACN2CY_RS11085 WP_046998295.1 2056761..2058611(-) (uvrC) [Aliarcobacter butzleri strain BNI-4356]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCGGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTAGAAAGTTGCGAGTGGATTGTTGTACCAAATGAACATGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATTTTGCTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGACTTGATATAACTAGAAGGATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCATTGGTACAAAAGAAATCTTGT
GTAAAAGGTAAAAAAGCCTGTCTTTTTCATCAAATACAAAAATGTTTAGCGCCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGATTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGGAATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATCGT
AAGAATGTTTTTAAGAGATGGAAAATTAACTTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCGCATGAACTTGAAATTACAAATGAATTAGAAGAGTTTTTACATACAAGATTTAATAAAAAAATTAAACTAAT
AAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAATTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGCTGTTTAATCTTCAAACTCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAGTTTAAATACTTTTGATAAAAA
AGCTTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAGAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATAGATGGAGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATTATTGCAATAGCAAAAGAAAAGATTGATGCAAAAGCCCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAACGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G9KSN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.907

97.89

0.508

Multiple sequence alignment