Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACN2CX_RS03745 Genome accession   NZ_CP183407
Coordinates   699749..701599 (-) Length   616 a.a.
NCBI ID   WP_419676028.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain BNI-4385     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 694749..706599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2CX_RS03730 (ACN2CX_03730) - 695156..696284 (+) 1129 Protein_729 iron-containing alcohol dehydrogenase -
  ACN2CX_RS03735 (ACN2CX_03735) - 696334..698595 (-) 2262 WP_260885497.1 methyl-accepting chemotaxis protein -
  ACN2CX_RS03740 (ACN2CX_03740) - 698724..699746 (-) 1023 WP_419676027.1 alanine racemase -
  ACN2CX_RS03745 (ACN2CX_03745) uvrC 699749..701599 (-) 1851 WP_419676028.1 excinuclease ABC subunit UvrC Machinery gene
  ACN2CX_RS03750 (ACN2CX_03750) - 701755..704151 (+) 2397 WP_419676029.1 methyl-accepting chemotaxis protein -
  ACN2CX_RS03755 (ACN2CX_03755) - 704506..706509 (+) 2004 WP_419676030.1 HAMP domain-containing methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72311.47 Da        Isoelectric Point: 9.1365

>NTDB_id=1105589 ACN2CX_RS03745 WP_419676028.1 699749..701599(-) (uvrC) [Aliarcobacter butzleri strain BNI-4385]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRNRIKTIEKSQI
KSGIDLATNEDIDIFAINTNNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNENLNTFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFEELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1105589 ACN2CX_RS03745 WP_419676028.1 699749..701599(-) (uvrC) [Aliarcobacter butzleri strain BNI-4385]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCGGGAGTTTATCAATACTTTGATAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTGGAAAGTTGCGAATGGATTGTTGTACCAAATGAACACGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATTTTACTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGGCTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCATTAGTACAAAAGAAATCTTGT
GTAAAGGGTAAAAAAGCTTGTCTTTTTCATCAAATACAAAAATGTTTAGCACCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGGTTTGAAGAAGCAATGACTTTAAGAAATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGGTATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATACAAATAATAAAAAAGCTGTAATTGT
AAGAATGTTTTTAAGAGATGGAAAATTGACTTCATCAAGCCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCCCATGAACTTGAAATTACAAATGAATTAGAAGAGTTTTTACATACAAGATTTAACAAAAAGATTAAACTAAT
CAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAACTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGTTGTTTAATCTTCAAACGCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAATTTAAATACTTTTGATAAAAA
AGCCTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATAGATGGAGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATTATTGCAATAGCAAAAGAAAAGATTGATGCAAAAGCCCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAGAAAAGCATCATTTGAAGAACTAAAAACTGTTTTAAACGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.073

97.89

0.51

Multiple sequence alignment