Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACN2CZ_RS03660 Genome accession   NZ_CP183403
Coordinates   707819..709669 (-) Length   616 a.a.
NCBI ID   WP_419681538.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain BNI-4380     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 702819..714669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2CZ_RS03645 (ACN2CZ_03645) - 703225..704352 (+) 1128 WP_419681532.1 iron-containing alcohol dehydrogenase -
  ACN2CZ_RS03650 (ACN2CZ_03650) - 704399..706666 (-) 2268 WP_419681534.1 methyl-accepting chemotaxis protein -
  ACN2CZ_RS03655 (ACN2CZ_03655) - 706794..707816 (-) 1023 WP_419681536.1 alanine racemase -
  ACN2CZ_RS03660 (ACN2CZ_03660) uvrC 707819..709669 (-) 1851 WP_419681538.1 excinuclease ABC subunit UvrC Machinery gene
  ACN2CZ_RS03665 (ACN2CZ_03665) - 709826..712219 (+) 2394 WP_419681540.1 methyl-accepting chemotaxis protein -
  ACN2CZ_RS03670 (ACN2CZ_03670) - 712570..714573 (+) 2004 WP_419681542.1 HAMP domain-containing methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72270.41 Da        Isoelectric Point: 8.9347

>NTDB_id=1105567 ACN2CZ_RS03660 WP_419681538.1 707819..709669(-) (uvrC) [Aliarcobacter butzleri strain BNI-4380]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYVKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNESLNTFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVE
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1105567 ACN2CZ_RS03660 WP_419681538.1 707819..709669(-) (uvrC) [Aliarcobacter butzleri strain BNI-4380]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCGGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAAGTACTTAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGCGAAGTGGAAAGTTGCGAATGGATTGTTGTACCAAATGAACACGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATACAATATCTTACTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGACTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCACTAGTACAAAAGAAATCTTGT
GTAAAGGGTAAAAAAGCCTGTCTTTTCCATCAAATACAAAAATGTTTAGCACCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGTAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGGTTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCAGGAATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATCGT
AAGAATGTTTTTAAGAGATGGTAAATTAACTTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTAATTGCGCATGAACTTGAAATTACAAATGAATTGGAAGAGTTTTTACATACAAGATTTAATAAAAAAATTAAACTAAT
CAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAACTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGTTGTTTAATCTTCAAACTCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAGTTTAAATACTTTTGATAAAAA
AGCTTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATAGATGGTGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGGAA
TCTGTTGGTGTAAATCTTGATATTATTGCAATAGCAAAAGAAAAAATTGATGCGAAAGCCCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGAGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAAAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAATGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.907

97.89

0.508

Multiple sequence alignment