Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACN2BR_RS14460 Genome accession   NZ_CP183338
Coordinates   2965938..2966567 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC6030     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2960938..2971567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2BR_RS14445 (ACN2BR_14445) helD 2961180..2963234 (-) 2055 WP_000420536.1 DNA helicase IV -
  ACN2BR_RS14450 (ACN2BR_14450) yccF 2963357..2963803 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACN2BR_RS14455 (ACN2BR_14455) yccS 2963813..2965975 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ACN2BR_RS14460 (ACN2BR_14460) sxy/tfoX 2965938..2966567 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACN2BR_RS14465 (ACN2BR_14465) sulA 2966786..2967295 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACN2BR_RS14470 (ACN2BR_14470) ompA 2967652..2968704 (+) 1053 WP_001361736.1 porin OmpA -
  ACN2BR_RS14475 (ACN2BR_14475) matP 2968780..2969232 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACN2BR_RS14480 (ACN2BR_14480) ycbZ 2969418..2971178 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1105357 ACN2BR_RS14460 WP_000839153.1 2965938..2966567(-) (sxy/tfoX) [Escherichia coli strain EC6030]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1105357 ACN2BR_RS14460 WP_000839153.1 2965938..2966567(-) (sxy/tfoX) [Escherichia coli strain EC6030]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment