Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN2C7_RS12195 Genome accession   NZ_CP183331
Coordinates   2497287..2498669 (+) Length   460 a.a.
NCBI ID   WP_419317244.1    Uniprot ID   -
Organism   Caulobacter sp. ErkDOM-E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2492287..2503669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2C7_RS12180 (ACN2C7_12180) - 2493794..2495308 (+) 1515 WP_419317241.1 replicative DNA helicase -
  ACN2C7_RS12185 (ACN2C7_12185) - 2495380..2496069 (+) 690 WP_419317242.1 MarC family protein -
  ACN2C7_RS12190 (ACN2C7_12190) alr 2496133..2497215 (+) 1083 WP_419317243.1 alanine racemase -
  ACN2C7_RS12195 (ACN2C7_12195) radA 2497287..2498669 (+) 1383 WP_419317244.1 DNA repair protein RadA Machinery gene
  ACN2C7_RS12200 (ACN2C7_12200) - 2498666..2499283 (+) 618 WP_419317245.1 CvpA family protein -
  ACN2C7_RS12205 (ACN2C7_12205) purF 2499280..2500779 (+) 1500 WP_419317246.1 amidophosphoribosyltransferase -
  ACN2C7_RS12210 (ACN2C7_12210) - 2500791..2501804 (+) 1014 WP_419317247.1 bile acid:sodium symporter family protein -
  ACN2C7_RS12215 (ACN2C7_12215) - 2501813..2502562 (+) 750 WP_419317248.1 SDR family NAD(P)-dependent oxidoreductase -
  ACN2C7_RS12220 (ACN2C7_12220) - 2502567..2503292 (-) 726 WP_419317249.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48013.95 Da        Isoelectric Point: 5.9162

>NTDB_id=1105335 ACN2C7_RS12195 WP_419317244.1 2497287..2498669(+) (radA) [Caulobacter sp. ErkDOM-E]
MARDGAVYACQSCGAVQTKWSGQCPACQSWNTLAEEVGARAPGALSVTKATRTRGLQFTDLESDTPAPPRIITGVDEFDR
VCGGGVVPGSAILIGGDPGVGKSTLLLEVVARASMKGVSCAYISGEEAVAQIRGRAQRMGFEKAPVKLAAESSLRDILDG
LKRDNFDLVVIDSIQTMWSDAHEAGPGTVTQVRACAQELVRLAKKKGVAILMVGHVTKDGQIAGPRVVEHLVDAVLSFEG
ERGYPFRILRGAKNRFGATDEIGVFEMGDVGLREVKNPSALFLNEGGERAAGAAVFAGIEGSRPVLVEFQALVSPSAYGT
PRRAVVGWDSGRLAMVLAVLESRCGLGFGDKDVYLNVAGGLRITEPAADLAAAAALASSALDIALPQDCVVFGEVSLSGE
VRPVSRMETRLKEAAKLGFGRALSSLSGLPEGGGSLPVAGVARLADAVRRIGDEIWGQLT

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1105335 ACN2C7_RS12195 WP_419317244.1 2497287..2498669(+) (radA) [Caulobacter sp. ErkDOM-E]
ATGGCCCGTGACGGCGCCGTCTACGCCTGCCAGTCTTGCGGCGCGGTCCAGACCAAGTGGTCGGGACAATGCCCGGCCTG
CCAATCCTGGAATACCCTGGCCGAAGAAGTTGGCGCGCGAGCGCCGGGCGCGCTTTCCGTCACCAAGGCCACCCGCACGC
GCGGCCTGCAGTTCACCGATCTGGAAAGCGACACCCCCGCCCCGCCTCGCATCATCACCGGGGTCGACGAGTTCGACCGC
GTCTGTGGCGGCGGGGTGGTGCCCGGTTCGGCCATCCTGATCGGCGGCGACCCCGGCGTGGGGAAATCTACCCTGTTGCT
GGAGGTGGTGGCCCGGGCCTCAATGAAGGGCGTGTCCTGCGCCTACATCTCCGGTGAGGAGGCCGTGGCGCAGATCCGCG
GGCGCGCCCAACGGATGGGCTTCGAGAAGGCGCCGGTGAAACTGGCGGCCGAGAGCAGCCTGCGCGACATCCTCGACGGC
CTGAAACGCGACAATTTCGACCTGGTGGTCATCGACTCGATCCAGACCATGTGGAGCGACGCCCACGAGGCGGGTCCCGG
CACGGTCACCCAGGTCCGCGCCTGCGCCCAGGAACTGGTGCGCCTGGCCAAGAAGAAGGGCGTGGCGATCCTGATGGTCG
GCCACGTCACCAAGGATGGCCAGATCGCCGGTCCGCGCGTGGTCGAGCACCTGGTCGACGCCGTGCTCTCGTTCGAGGGC
GAGCGCGGCTACCCGTTCCGCATTCTGCGCGGCGCCAAGAACCGCTTCGGGGCCACCGACGAGATCGGCGTCTTCGAGAT
GGGTGATGTCGGCCTGCGCGAGGTCAAGAACCCCTCGGCCCTGTTCCTCAACGAGGGCGGCGAGCGCGCCGCCGGCGCAG
CGGTCTTCGCCGGTATCGAGGGTTCGCGGCCCGTCCTGGTGGAATTCCAGGCCCTGGTGTCGCCCTCCGCCTACGGAACG
CCGCGTCGGGCCGTCGTGGGCTGGGACTCAGGGCGCCTCGCCATGGTGCTCGCCGTACTTGAATCGCGGTGCGGCCTTGG
TTTTGGCGACAAGGACGTCTATCTGAACGTCGCTGGCGGCCTGCGCATTACAGAGCCGGCGGCGGATCTCGCGGCGGCGG
CGGCCCTGGCCTCTTCAGCCCTCGATATCGCCCTGCCCCAGGACTGCGTCGTGTTCGGCGAAGTCAGCCTGTCGGGCGAG
GTGCGGCCGGTCAGCCGGATGGAGACACGTTTGAAGGAAGCCGCAAAACTGGGGTTTGGCCGGGCGCTATCATCGCTTTC
CGGCCTGCCTGAAGGCGGTGGCTCCTTGCCAGTGGCGGGGGTCGCGCGGCTCGCCGACGCCGTGCGCCGCATCGGCGACG
AGATCTGGGGCCAGCTGACGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(85-221)

Subunit ChlI of Mg-chelatase (ChlI)

(339-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.348

0.487
  radA Streptococcus pneumoniae Rx1

45.197

99.565

0.45
  radA Streptococcus pneumoniae D39

45.197

99.565

0.45
  radA Streptococcus pneumoniae R6

45.197

99.565

0.45
  radA Streptococcus pneumoniae TIGR4

45.197

99.565

0.45
  radA Streptococcus mitis NCTC 12261

44.978

99.565

0.448
  radA Streptococcus mitis SK321

44.956

99.13

0.446

Multiple sequence alignment