Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN2C6_RS06960 Genome accession   NZ_CP183329
Coordinates   1412540..1413922 (-) Length   460 a.a.
NCBI ID   WP_419255176.1    Uniprot ID   -
Organism   Caulobacter sp. ErkDOM-YI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1407540..1418922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2C6_RS06935 (ACN2C6_06935) - 1407944..1408642 (+) 699 WP_419255171.1 hypothetical protein -
  ACN2C6_RS06940 (ACN2C6_06940) - 1408647..1409396 (-) 750 WP_419255172.1 SDR family NAD(P)-dependent oxidoreductase -
  ACN2C6_RS06945 (ACN2C6_06945) - 1409405..1410418 (-) 1014 WP_419255173.1 bile acid:sodium symporter family protein -
  ACN2C6_RS06950 (ACN2C6_06950) purF 1410430..1411929 (-) 1500 WP_419255174.1 amidophosphoribosyltransferase -
  ACN2C6_RS06955 (ACN2C6_06955) - 1411926..1412543 (-) 618 WP_419255175.1 CvpA family protein -
  ACN2C6_RS06960 (ACN2C6_06960) radA 1412540..1413922 (-) 1383 WP_419255176.1 DNA repair protein RadA Machinery gene
  ACN2C6_RS06965 (ACN2C6_06965) alr 1413994..1415076 (-) 1083 WP_419255177.1 alanine racemase -
  ACN2C6_RS06970 (ACN2C6_06970) - 1415140..1415829 (-) 690 WP_419255178.1 MarC family protein -
  ACN2C6_RS06975 (ACN2C6_06975) - 1415901..1417415 (-) 1515 WP_419255179.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47987.87 Da        Isoelectric Point: 5.9162

>NTDB_id=1105324 ACN2C6_RS06960 WP_419255176.1 1412540..1413922(-) (radA) [Caulobacter sp. ErkDOM-YI]
MARDGAVYACQSCGAVQTKWSGQCPACQSWNSLAEEVGARAPGALSVTKATRTRGLQFTDLESDTPAPARIVTGVDEFDR
VCGGGVVPGSAILIGGDPGVGKSTLLLEVVARASMKGVSCAYISGEEAVAQIRGRAQRMGFEKAPVKLAAESSLRDILDG
LKRDNFDLVVIDSIQTMWSDAHEAGPGTVTQVRACAQELVRLAKKRGVAILMVGHVTKDGQIAGPRVVEHLVDAVLSFEG
ERGYPFRILRGAKNRFGATDEIGVFEMGDVGLREVKNPSALFLNEGGERAAGAAVFAGIEGSRPVLVEFQALVSPSAYGT
PRRAVVGWDSGRLAMVLAVLESRCGLGFGDKDVYLNVAGGLRITEPAADLAAAAALASSALDIALPQDCVVFGEVSLSGE
VRPVSRMETRLKEAAKLGFGRALSSLSGLPEGGGSLPVAGVARLADAVRRIGDEIWGQLT

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1105324 ACN2C6_RS06960 WP_419255176.1 1412540..1413922(-) (radA) [Caulobacter sp. ErkDOM-YI]
ATGGCCCGTGACGGCGCCGTCTACGCCTGCCAGTCTTGCGGCGCGGTCCAGACCAAGTGGTCGGGACAGTGCCCGGCCTG
CCAATCCTGGAACAGCCTGGCCGAGGAAGTCGGCGCGCGAGCGCCGGGTGCGCTCTCCGTCACCAAGGCCACCCGCACGC
GCGGCCTGCAGTTCACGGATCTGGAAAGCGACACGCCCGCCCCCGCTCGCATCGTCACGGGGGTCGATGAGTTCGACCGC
GTCTGTGGCGGCGGAGTGGTGCCCGGCTCGGCCATCCTGATCGGCGGCGACCCCGGCGTGGGGAAATCCACCCTGTTGCT
GGAGGTGGTGGCCCGGGCCTCGATGAAGGGCGTGTCCTGCGCCTATATCTCCGGTGAGGAGGCGGTGGCGCAGATCCGTG
GGCGCGCCCAACGGATGGGCTTCGAGAAGGCGCCGGTGAAGCTGGCGGCCGAGAGCAGCCTGCGCGACATCCTCGACGGC
CTGAAACGCGACAATTTCGACCTGGTGGTCATCGACTCCATCCAGACCATGTGGAGCGACGCCCACGAGGCGGGCCCGGG
CACGGTCACCCAGGTGCGCGCCTGCGCCCAGGAACTGGTGCGCCTGGCCAAGAAGAGGGGCGTGGCGATCCTGATGGTCG
GCCATGTGACCAAGGATGGCCAGATCGCCGGTCCCCGCGTGGTCGAGCACCTGGTTGATGCGGTACTCAGCTTCGAGGGC
GAGCGCGGCTATCCGTTCCGCATCCTGCGCGGCGCCAAGAACCGCTTCGGGGCCACCGACGAGATCGGCGTCTTCGAGAT
GGGCGATGTCGGCCTGCGCGAGGTCAAGAACCCCTCGGCCCTGTTCCTCAACGAGGGCGGTGAACGCGCTGCGGGCGCTG
CGGTGTTCGCCGGCATCGAGGGCTCGCGGCCCGTACTGGTGGAATTCCAAGCCTTGGTGTCGCCGTCAGCCTACGGAACG
CCGCGTCGGGCCGTCGTGGGCTGGGACTCAGGACGCCTCGCGATGGTGCTGGCCGTACTTGAATCGCGGTGCGGCCTTGG
TTTTGGCGACAAGGACGTCTATCTGAACGTCGCTGGCGGCCTGCGCATAACAGAGCCGGCGGCGGATCTCGCGGCGGCGG
CGGCCCTGGCCTCTTCAGCCCTCGATATCGCCCTGCCCCAGGACTGCGTCGTGTTCGGCGAGGTCAGCCTGTCGGGCGAG
GTGCGGCCGGTCAGCCGGATGGAGACACGTTTGAAGGAAGCCGCAAAACTGGGGTTCGGCCGGGCGCTCTCATCGCTTTC
CGGCCTGCCTGAAGGCGGTGGCTCCTTGCCTGTGGCGGGGGTCGCGCGGCTCGCCGACGCCGTGCGCCGCATCGGCGACG
AGATCTGGGGCCAACTGACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(339-421)

AAA domain (AAA_25)

(85-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.348

0.48
  radA Streptococcus pneumoniae Rx1

45.415

99.565

0.452
  radA Streptococcus pneumoniae D39

45.415

99.565

0.452
  radA Streptococcus pneumoniae R6

45.415

99.565

0.452
  radA Streptococcus pneumoniae TIGR4

45.415

99.565

0.452
  radA Streptococcus mitis NCTC 12261

45.197

99.565

0.45
  radA Streptococcus mitis SK321

45.175

99.13

0.448

Multiple sequence alignment