Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACNSPE_RS15445 Genome accession   NZ_CP183326
Coordinates   3071429..3073246 (-) Length   605 a.a.
NCBI ID   WP_057763895.1    Uniprot ID   A0A4R1AX17
Organism   Cytobacillus praedii strain MM2025     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3066429..3078246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSPE_RS15410 (ACNSPE_15410) - 3066834..3067466 (-) 633 WP_057763905.1 GTP pyrophosphokinase -
  ACNSPE_RS15415 (ACNSPE_15415) - 3067548..3067919 (-) 372 WP_419392569.1 hypothetical protein -
  ACNSPE_RS15420 (ACNSPE_15420) - 3068044..3068631 (+) 588 WP_419392570.1 CYTH domain-containing protein -
  ACNSPE_RS15425 (ACNSPE_15425) - 3068784..3069422 (+) 639 WP_419392571.1 lytic transglycosylase domain-containing protein -
  ACNSPE_RS15430 (ACNSPE_15430) - 3069625..3070032 (+) 408 WP_057763900.1 globin -
  ACNSPE_RS15435 (ACNSPE_15435) - 3070029..3070928 (+) 900 WP_057763899.1 ClpXP adapter SpxH family protein -
  ACNSPE_RS15440 (ACNSPE_15440) - 3071208..3071387 (+) 180 WP_057763896.1 hypothetical protein -
  ACNSPE_RS15445 (ACNSPE_15445) pepF 3071429..3073246 (-) 1818 WP_057763895.1 oligoendopeptidase F Regulator
  ACNSPE_RS15450 (ACNSPE_15450) - 3073377..3074573 (-) 1197 WP_419392572.1 competence protein CoiA -
  ACNSPE_RS15455 (ACNSPE_15455) cls 3074669..3076186 (-) 1518 WP_131236773.1 cardiolipin synthase -
  ACNSPE_RS15460 (ACNSPE_15460) mecA 3076270..3076932 (-) 663 WP_057763889.1 adaptor protein MecA -
  ACNSPE_RS15465 (ACNSPE_15465) spxA 3077328..3077723 (-) 396 WP_053475258.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69726.08 Da        Isoelectric Point: 4.7683

>NTDB_id=1105294 ACNSPE_RS15445 WP_057763895.1 3071429..3073246(-) (pepF) [Cytobacillus praedii strain MM2025]
MTNETAVKKLPNRSEISVEDTWRLEDIFASDEAWDKEYKEVEALVPEASKYQGKLGESADELYEALQYQDHLLERLSKLY
TYAHMRYDQDTTNSFYQGMDDRIKGLYSQAASSLAYIVPELLAVEEEKINSFLDEKEALKVYKHSLEEINLQRPHVLSAE
AESLLAQASEVFGASSNTFGMLNNADLEFPSITDENGENVEITHGRYIRFLESDDQRVRHDAFKAVYDTYGKFRNTFAST
LSGNVKTNNFNAKVRNYDSARHAALAANNIPESVYDNLVKTVNDNLHLLHRYVKLRKKVLGLEELHMYDLYTPLVKDVKM
EVTYNEAKDLILKGLAPLGEDYLNVLKEGFDNRWVDIHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNESLLNDYLLKTIDDEKKRLFLLNHYLEGFRGTVFRQTMFAEFEHLIYQKVQ
NNEALTAETLTKEYYELNKKYFGEEDLIIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGKPAVERYIDF
LKAGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLIEMESLLG

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1105294 ACNSPE_RS15445 WP_057763895.1 3071429..3073246(-) (pepF) [Cytobacillus praedii strain MM2025]
ATGACTAATGAAACAGCAGTTAAAAAGCTTCCGAACAGAAGTGAAATTTCTGTAGAGGATACATGGAGGCTGGAGGATAT
TTTTGCTAGTGATGAAGCATGGGATAAGGAATACAAGGAAGTAGAGGCGCTAGTTCCAGAAGCAAGCAAGTATCAGGGGA
AACTTGGCGAAAGTGCAGATGAATTGTATGAAGCCCTTCAGTATCAGGATCACTTATTAGAACGTCTTTCTAAGCTTTAT
ACATATGCACATATGCGCTATGACCAAGATACAACAAACTCCTTTTATCAGGGGATGGATGACCGAATTAAAGGGTTGTA
CTCTCAAGCAGCTAGCAGTTTAGCCTATATTGTTCCAGAACTTCTTGCTGTGGAAGAGGAGAAAATTAATTCCTTTTTAG
ATGAAAAGGAAGCACTGAAAGTTTACAAGCACTCTTTGGAAGAAATCAATCTGCAGCGTCCGCATGTTTTATCAGCTGAG
GCAGAAAGCTTGCTTGCTCAAGCTTCTGAAGTATTCGGTGCATCAAGCAATACGTTTGGAATGCTAAATAATGCAGATCT
TGAGTTCCCGTCCATTACAGATGAAAATGGGGAGAATGTTGAGATTACTCATGGCCGCTATATCCGTTTTCTAGAAAGCG
ATGACCAGCGTGTAAGGCATGATGCGTTCAAAGCAGTCTATGACACTTACGGCAAGTTCCGTAATACTTTTGCAAGTACA
TTAAGCGGAAATGTGAAAACAAATAATTTTAATGCGAAAGTTAGAAATTATGATTCTGCACGTCATGCCGCACTAGCAGC
TAATAATATTCCTGAATCGGTCTATGATAATCTTGTTAAAACAGTGAACGATAATCTGCACTTATTACACCGCTATGTCA
AACTTCGTAAGAAAGTGCTCGGTTTAGAAGAGCTCCATATGTATGACCTCTATACACCTCTTGTAAAAGATGTGAAGATG
GAAGTGACATATAATGAAGCAAAGGATTTAATACTAAAAGGATTAGCGCCTCTAGGAGAAGACTATTTAAATGTTCTCAA
AGAAGGCTTTGACAATCGATGGGTGGATATCCATGAAAATAAAGGGAAGCGAAGCGGTGCCTATTCTTCAGGAACATACG
GAACAAATCCATATATCTTGATGAACTGGCAAGACAATGTGAACAATCTGTTTACACTAGCACATGAATTTGGGCATTCC
GTGCATAGTTACTATACAAGAAAATCCCAGCCATACCCGTATGGAAACTATTCCATTTTTGTAGCAGAGGTTGCTTCCAC
ATGTAATGAATCACTGTTAAATGATTATTTGCTTAAAACGATCGATGATGAGAAGAAGCGTTTATTCCTGCTAAATCATT
ATTTGGAAGGCTTTAGAGGAACTGTATTCCGTCAAACGATGTTTGCAGAATTTGAGCATCTCATTTATCAGAAGGTACAA
AACAATGAAGCGTTAACTGCTGAAACATTGACTAAGGAATATTATGAGTTGAATAAGAAGTATTTTGGAGAAGAAGATCT
TATTATAGATGAAGAAATTGGATTAGAGTGGTCCAGAATTCCACATTTTTATTACAATTACTATGTTTATCAATATGCAA
CTGGTTTCAGTGCAGCAACAGCACTAAGCAAACAAATTTTAGAAGAAGGCAAACCAGCTGTGGAGCGGTATATTGACTTC
TTAAAAGCAGGAAGCTCTGATTACCCAATTGAGGTATTAAAGAAAGCCGGAGTAGACATGACAAGCTCAAAACCAATTGA
GGATGCTTGTAAAGTATTTGAGGAAAAACTAATTGAAATGGAAAGCCTGCTTGGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1AX17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.42

98.347

0.496

Multiple sequence alignment