Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   ACNVED_RS07130 Genome accession   NZ_CP183303
Coordinates   1624988..1625326 (+) Length   112 a.a.
NCBI ID   WP_419421061.1    Uniprot ID   -
Organism   Legionella sp. D16C41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619988..1630326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVED_RS07105 (ACNVED_07105) acpP 1620375..1620623 (+) 249 WP_419421056.1 acyl carrier protein -
  ACNVED_RS07110 (ACNVED_07110) fabF 1620642..1621889 (+) 1248 WP_419421057.1 beta-ketoacyl-ACP synthase II -
  ACNVED_RS07115 (ACNVED_07115) mltG 1622391..1623431 (+) 1041 WP_419421058.1 endolytic transglycosylase MltG -
  ACNVED_RS07120 (ACNVED_07120) tmk 1623431..1624069 (+) 639 WP_419421059.1 dTMP kinase -
  ACNVED_RS07125 (ACNVED_07125) - 1624056..1624979 (+) 924 WP_419421060.1 hypothetical protein -
  ACNVED_RS07130 (ACNVED_07130) pilZ 1624988..1625326 (+) 339 WP_419421061.1 PilZ domain-containing protein Machinery gene
  ACNVED_RS07135 (ACNVED_07135) - 1625329..1626111 (+) 783 WP_419421062.1 TatD family hydrolase -
  ACNVED_RS07140 (ACNVED_07140) - 1626134..1627762 (+) 1629 WP_419421063.1 FAD-dependent monooxygenase -
  ACNVED_RS07145 (ACNVED_07145) - 1627923..1629041 (+) 1119 WP_419421064.1 anhydro-N-acetylmuramic acid kinase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12158.18 Da        Isoelectric Point: 9.4394

>NTDB_id=1105174 ACNVED_RS07130 WP_419421061.1 1624988..1625326(+) (pilZ) [Legionella sp. D16C41]
MIDVPIINGNFPTEAALYTAYMPFITNGGLFIRTNLVLTLGTQVQLSLKLLNETKPYTISAKVAWITPRGSQGNKPAGLG
LQFIGEESPALKNKIETYLAAMLKSSQITDTI

Nucleotide


Download         Length: 339 bp        

>NTDB_id=1105174 ACNVED_RS07130 WP_419421061.1 1624988..1625326(+) (pilZ) [Legionella sp. D16C41]
ATGATTGACGTGCCTATTATAAATGGAAATTTTCCAACAGAAGCTGCTCTTTATACAGCTTATATGCCTTTTATAACCAA
TGGCGGATTATTTATAAGAACAAATTTAGTATTGACTTTGGGTACTCAAGTACAATTATCATTAAAATTACTTAATGAAA
CTAAACCATATACTATTTCTGCTAAAGTCGCCTGGATTACACCGCGTGGATCGCAAGGTAACAAGCCTGCTGGATTAGGC
CTACAATTCATAGGTGAAGAAAGCCCGGCATTAAAAAATAAAATAGAAACCTATTTAGCTGCCATGCTAAAATCATCGCA
AATAACTGACACAATATAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(15-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

63.551

95.536

0.607
  pilZ Legionella pneumophila strain ERS1305867

63.551

95.536

0.607

Multiple sequence alignment