Detailed information NTG1104938

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: ACN08S_RS23490
• Genome accession: NZ_CP183265
• Coordinates: 2486555..2489941 (-)
• Length: 1128 a.a.
• NCBI ID: WP_419209282.1
• Uniprot ID: -
• Organism: Photobacterium leiognathi subsp. mandapamensis strain Sr2.36
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2481555..2494941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN08S_RS23470 (ACN08S_23355)	-	2481702..2482688 (-)	987	WP_008988493.1	ABC transporter permease	-
ACN08S_RS23475 (ACN08S_23360)	-	2482838..2483158 (-)	321	Protein_2235	ABC transporter substrate-binding protein	-
ACN08S_RS23480 (ACN08S_23365)	-	2483232..2484409 (+)	1178	WP_419207229.1	IS3 family transposase	-
ACN08S_RS23485 (ACN08S_23370)	-	2484403..2485776 (-)	1374	Protein_2237	ABC transporter substrate-binding protein	-
ACN08S_RS23490 (ACN08S_23375)	chiS	2486555..2489941 (-)	3387	WP_419209282.1	response regulator	Regulator
ACN08S_RS23495 (ACN08S_23380)	rsmC	2490242..2491264 (-)	1023	WP_419209283.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
ACN08S_RS23500 (ACN08S_23385)	-	2491423..2492508 (-)	1086	WP_008988489.1	AI-2E family transporter	-
ACN08S_RS23505 (ACN08S_23390)	hemL	2492867..2494165 (-)	1299	WP_008988488.1	glutamate-1-semialdehyde 2,1-aminomutase	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127204.67 Da
• Isoelectric Point: 6.3006

>NTDB_id=1104938 ACN08S_RS23490 WP_419209282.1 2486555..2489941(-) (chiS) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
MQNTTRFKRLQHTLMLAFIVLSITLLVLSALYFLNSHTKDLAEQSINHLASLRDNKQKQLYSFFAAKESEVKSFARSELS
NNSGGRFYGLVGAYHQLGDIEPQLAKQGRAQYFSQTLTKKNDNNNQTTYVGHERYRLMYKRYNAVYKEYLKRSDFKDIML
VDLSGNVVYSVHNHSLFGINLLRNQQASPALKQTFETIKQKTKLSQKQPDQVPVTFTDFSQTANNSDTTAWFAAPIIQQG
YLHSYVFMELSNKAISELIQDLGNNANYVQTLLIGQDHKLRFSAESDLPKTLQSESISQALAGKSGVGSFKNYNHIPVLS
AFSPLDILGHKWALVVELPEKEAFARITELEKIFGFGMITAILLVIFVSHLLSNSITAPLLRLTWAAEKASGGDLDQIIE
GTERSDEIGRLAISFSRMQRSIREKIGLIKTQNDELEQSLKIIQQKNDELQTADKLKDEFLATTSHELRTPLHGMVGIAE
SLLAGANGPLQDPQRRQLEMLINSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQ
IPADLPLVDADEQRLEQVLYNLVGNAIKYTSEGKIIISATVLEQQLRVQVVDTGQGIPSEQLEHIFEPLIQANSGSANYR
QGAGLGLSISRQLIELMGGRLYVSSQPMVGTTFSFTLNLATEAQINAISHESTSQHFQAPSLDSSSCESSNLPENPNGDL
ILIVDDEPVNLQILNNFLRLAGYRVKTAENGPQALAMVEEQRPDLILLDIMMPEMSGYEVCTILRKQYSIFELPIMMLSA
LGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQASKTEHEKQKNQSLQQEIHRREQVEISLIEAQSRLLGLLDSTT
EAIICVQNEGRIRYVNSAAGKLFKRPPEQLERHTISDILAAELPDTITDSHHYNGKLSFLIGEQVQTLSTDVINLPQESG
LKQMFVFDSQGPSADHRIGLLENAVDMLSEFAFNGDKNNLQQLRELGGEFTRLADKLDSNNQNKGQQIRELLVESMKNTL
MLWESESNKTKFELAEESGLWRVYLDRSTLQTRTLDKYLHLETLPKTPRWRTVINTMDYVLERCNQPTAARQELVTMRDK
LHHTISTS

Nucleotide

• Length: 3387 bp

>NTDB_id=1104938 ACN08S_RS23490 WP_419209282.1 2486555..2489941(-) (chiS) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
ATGCAGAATACTACGCGATTTAAACGTCTCCAACATACGTTAATGTTGGCTTTTATTGTGCTCAGCATCACCCTTTTGGT
TTTATCTGCCTTATATTTTCTAAACTCACATACCAAAGATCTCGCCGAGCAAAGTATCAATCACTTAGCCTCTTTACGCG
ATAATAAGCAAAAGCAGCTCTACAGCTTTTTTGCCGCTAAAGAATCAGAGGTGAAGAGTTTCGCTCGCTCAGAATTATCC
AATAACAGTGGTGGTCGTTTTTATGGTCTCGTGGGCGCTTATCACCAACTCGGTGACATCGAGCCACAACTTGCAAAGCA
AGGGCGTGCTCAATATTTCTCACAAACCCTGACCAAGAAGAACGACAACAACAACCAAACCACCTATGTAGGGCATGAAC
GCTATCGTTTGATGTATAAGCGCTATAACGCAGTTTATAAAGAATATCTAAAACGTTCAGACTTCAAAGACATCATGTTG
GTTGATTTGTCAGGTAACGTGGTTTATTCCGTCCATAATCACAGCTTATTTGGCATTAATTTGCTTAGAAATCAGCAAGC
ATCACCTGCACTAAAGCAGACCTTTGAAACCATTAAGCAAAAAACCAAATTAAGCCAGAAACAGCCTGATCAAGTACCTG
TTACTTTTACTGATTTCAGTCAAACAGCCAATAACAGTGATACAACGGCATGGTTTGCTGCCCCTATTATTCAGCAAGGC
TATTTGCACAGTTATGTGTTTATGGAGCTGAGTAACAAAGCAATTTCTGAGCTCATTCAAGATCTGGGTAACAATGCTAA
TTACGTCCAAACACTACTGATTGGACAAGATCATAAACTGCGTTTTTCAGCAGAATCAGATTTACCCAAAACCTTACAAA
GTGAAAGTATTAGCCAAGCATTAGCAGGGAAATCTGGCGTGGGTAGCTTTAAAAACTACAATCACATCCCTGTACTCAGT
GCCTTTTCTCCACTCGATATACTAGGTCACAAGTGGGCGTTAGTGGTTGAGCTACCAGAAAAAGAAGCCTTTGCACGTAT
TACTGAGTTAGAGAAAATCTTTGGCTTTGGCATGATCACCGCCATTCTCTTGGTGATTTTCGTCTCTCACTTACTTTCCA
ACTCCATTACTGCGCCATTGTTACGTTTAACTTGGGCTGCTGAGAAAGCCTCTGGTGGCGATCTTGATCAGATCATTGAA
GGTACTGAACGCAGCGATGAAATTGGTCGCTTAGCGATCAGTTTCTCACGTATGCAGCGATCTATCCGAGAGAAAATTGG
TTTAATAAAAACCCAAAATGATGAGCTAGAACAGAGCCTTAAGATCATCCAGCAGAAAAATGATGAGCTACAAACCGCAG
ATAAACTAAAAGATGAATTTCTTGCGACGACTTCCCATGAACTGCGTACACCGCTTCATGGCATGGTCGGTATTGCTGAA
TCCCTACTAGCAGGTGCTAATGGCCCACTGCAAGATCCACAGCGTCGTCAGCTTGAAATGCTAATCAACAGTGGTCAACG
CTTAACAAACTTGGTTGACGATCTGCTGGATTATCACAAGATGCGCTATGGCGATCTTGATATTCATCGCCATGCTATTG
ATTTATCAGCAGCTGTACGTTTGGTTTTAGAACTTTCAAGCCATCTATTAGGTAATAAACCGGTACGTATTATTAACCAA
ATACCAGCGGATTTACCGCTGGTTGATGCCGATGAACAGCGTCTAGAGCAAGTGCTATACAACCTTGTTGGTAATGCGAT
TAAGTACACATCTGAAGGGAAAATTATTATCTCTGCCACTGTGCTTGAGCAGCAATTACGAGTACAAGTCGTCGATACAG
GCCAAGGTATTCCTAGTGAGCAGCTTGAGCATATCTTTGAGCCATTGATCCAAGCGAATTCTGGCTCGGCTAATTATCGT
CAAGGGGCTGGGCTTGGGCTATCAATCAGCCGCCAACTGATTGAATTAATGGGTGGCCGTTTATACGTCAGCAGCCAGCC
AATGGTCGGTACAACCTTTAGCTTTACCTTGAATTTGGCGACAGAGGCGCAAATTAATGCGATTTCTCACGAGTCCACCA
GCCAACATTTCCAAGCACCATCATTAGATTCAAGCAGTTGTGAAAGCAGTAACTTACCAGAAAACCCTAATGGTGACTTG
ATTCTAATCGTTGATGACGAGCCTGTTAACCTACAGATCCTCAATAACTTTTTACGTTTGGCTGGGTATCGTGTGAAAAC
GGCAGAAAATGGTCCGCAAGCATTAGCCATGGTGGAAGAGCAACGTCCAGATCTGATTTTGCTCGACATTATGATGCCAG
AAATGAGTGGCTATGAAGTTTGTACAATCCTAAGAAAGCAATACTCTATTTTTGAGTTGCCAATCATGATGCTGTCAGCT
TTAGGACAGATCCAAGATCGCATTAAAGGCTTTGAGTGTGGCGCCAATGACTATTTAACCAAGCCCTTTAATAAGGAAGA
ACTGATTGCTCGTATTCAAGCTTACCTACAAGCAAGTAAGACTGAACATGAAAAGCAAAAGAATCAAAGCTTACAACAAG
AAATCCATCGCCGAGAGCAAGTCGAAATCAGCTTAATTGAAGCGCAAAGCCGTTTACTGGGGTTACTAGACTCCACCACA
GAAGCGATCATTTGTGTGCAAAATGAAGGTAGGATTCGTTATGTAAACAGCGCTGCAGGCAAGCTATTTAAACGTCCACC
AGAGCAGCTAGAGCGCCACACAATAAGTGATATTTTAGCTGCTGAATTACCTGATACCATCACTGATAGCCACCATTACA
ATGGGAAATTAAGCTTCCTGATCGGTGAGCAAGTGCAAACACTATCAACCGATGTCATTAATTTGCCGCAAGAATCTGGG
CTGAAACAGATGTTTGTATTCGACAGTCAAGGGCCATCGGCAGATCACCGTATTGGCTTATTAGAAAATGCGGTCGATAT
GTTGTCAGAGTTTGCCTTTAACGGTGATAAGAACAACCTACAGCAGCTTCGTGAGCTGGGCGGTGAATTTACTCGACTTG
CAGATAAACTTGATAGCAATAACCAAAATAAAGGCCAACAAATTCGAGAGTTGCTGGTTGAATCGATGAAAAACACCCTA
ATGCTATGGGAAAGCGAATCGAACAAAACCAAGTTTGAATTAGCAGAAGAAAGTGGTTTATGGCGTGTTTATCTAGACCG
TAGTACGTTACAAACGCGTACCTTAGATAAATATCTTCATCTTGAAACATTGCCTAAAACACCACGTTGGCGCACTGTGA
TTAATACCATGGATTATGTACTTGAACGCTGTAATCAACCAACAGCGGCACGCCAAGAGCTCGTCACCATGCGTGATAAA
CTGCACCATACCATTAGTACCAGCTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (571-680)

• Response regulator receiver domain (Response_reg) (721-833)

• HAMP domain (HAMP) (371-424)

• His Kinase A (phospho-acceptor) domain (HisKA) (457-522)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	56.433	99.911	0.564