Detailed information NTG1104860

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: ACN08M_RS09355
• Genome accession: NZ_CP183250
• Coordinates: 1928290..1931676 (-)
• Length: 1128 a.a.
• NCBI ID: WP_419239662.1
• Uniprot ID: -
• Organism: Photobacterium leiognathi subsp. mandapamensis strain Sc16.3
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1923290..1936676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN08M_RS09340 (ACN08M_09340)	-	1923662..1924696 (-)	1035	WP_419239661.1	ABC transporter permease	-
ACN08M_RS09345 (ACN08M_09345)	-	1924699..1925685 (-)	987	WP_008988493.1	ABC transporter permease	-
ACN08M_RS09350 (ACN08M_09350)	-	1925835..1927511 (-)	1677	WP_107184790.1	ABC transporter substrate-binding protein	-
ACN08M_RS09355 (ACN08M_09355)	chiS	1928290..1931676 (-)	3387	WP_419239662.1	response regulator	Regulator
ACN08M_RS09360 (ACN08M_09360)	rsmC	1931977..1932999 (-)	1023	WP_008988490.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
ACN08M_RS09365 (ACN08M_09365)	-	1933158..1934243 (-)	1086	WP_008988489.1	AI-2E family transporter	-
ACN08M_RS09370 (ACN08M_09370)	hemL	1934602..1935900 (-)	1299	WP_305818418.1	glutamate-1-semialdehyde 2,1-aminomutase	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127213.72 Da
• Isoelectric Point: 6.3006

>NTDB_id=1104860 ACN08M_RS09355 WP_419239662.1 1928290..1931676(-) (chiS) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
MQNTTRFKRLQHTLMLAFIVLSITPLVLSALYFLNSHTKDLAEQSINHLASLRDNKQKQLYSFFAAKESEVKSFARSELS
NNSGGRFYGLVGAYHQLGDIEPQLAKQGRAHYFSQTLTKKNDNNNQTTYVGHERYRLMYKRYNAVYKEYLKRSDFKDIML
VDLSGNVVYSVHNHSLFGINLLKNQQASPALKQTFETIKQKTKLSQKQPDQVPVTFTDFSQIANNSDTTAWFAAPIIQQG
YLHSYVFMELSNKAISELIQDLGNNANYVQTLLIGQDHKLRFSAESDLPKTLQSESISQALAGKSGVGSFKNYNHIPVLS
AFSPLDILGNKWALVVELPEKEAFARITELEKIFGFGMITAILLVIFVSHLLSNSITAPLLRLTWAAEKASGGDLDQIIE
GTERSDEIGRLAISFSRMQRSIREKIGLIKTQNDELEQSLKIIQQKNDELQTADKLKDEFLATTSHELRTPLHGMVGIAE
SLLAGANGPLQDPQRRQLEMLINSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQ
IPADLPLVDADEQRLEQVLYNLVGNAIKYTSEGKIIISATVLEQQLRVQVVDTGQGIPSEQLEHIFEPLIQANSGSANYR
QGAGLGLSISRQLIELMGGRLYVSSQPMVGTTFSFTLNLATEAQINAISHESTSQHFQAPSLDSSSCESSNLPENPNGDL
ILIVDDEPVNLQILNNFLRLAGYRVKTAENGPQALAMVEEQRPDLILLDIMMPEMSGYEVCTILRKQYSIFELPIMMLSA
LGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQATKTEHEKQKNQNLQQEIHRREQVEISLIEAQSRLLGLLDSTT
EAIICVQNEGRIRYVNSAAGKLFKRPPEQLERHTISDILAAELPDTITDSHHYNGKLSFLIGEQVQTLSTDIINLPQESG
LKQMFVFDSQGPSADHRIGLLENAVDMLSEFAFNGDKNNLQQLRELGGEFTRLADKLDSNNQNKGQQIRELLVESMKNTL
MLWESESNKTKFELAEESGLWRVYLDRSTLQTRTLDKYLHLETLPKTPRWRTVINTMDYVLERCNQPTAARQELVTMRDK
LHHTISTS

Nucleotide

• Length: 3387 bp

>NTDB_id=1104860 ACN08M_RS09355 WP_419239662.1 1928290..1931676(-) (chiS) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
ATGCAGAATACTACGCGATTTAAACGTCTCCAACATACGTTAATGTTGGCTTTTATTGTGCTCAGCATCACCCCTTTGGT
TTTATCTGCCTTATATTTTCTAAACTCACATACCAAAGATCTCGCCGAGCAAAGTATCAATCACTTAGCCTCTTTACGCG
ATAATAAGCAAAAGCAGCTCTACAGCTTTTTTGCCGCAAAAGAGTCAGAGGTGAAGAGTTTCGCTCGCTCAGAATTATCC
AACAACAGTGGCGGTCGTTTTTATGGCCTCGTGGGCGCTTATCACCAACTCGGTGACATCGAACCACAGCTTGCAAAGCA
AGGGCGTGCTCACTATTTCTCACAAACCCTGACCAAGAAGAACGACAACAACAACCAAACCACCTATGTAGGGCATGAAC
GCTATCGTTTGATGTATAAGCGCTATAACGCAGTTTATAAAGAATATCTAAAACGTTCAGACTTCAAAGACATCATGTTG
GTTGATTTGTCAGGTAACGTTGTTTATTCCGTCCATAATCACAGCTTATTTGGCATTAATTTGCTTAAAAATCAGCAAGC
ATCACCTGCACTAAAGCAGACCTTTGAAACCATTAAGCAAAAAACCAAATTAAGCCAGAAACAGCCCGATCAAGTACCTG
TTACTTTTACAGATTTCAGTCAAATAGCCAATAACAGTGATACAACGGCATGGTTTGCTGCCCCTATTATTCAGCAAGGC
TATTTGCACAGTTACGTGTTTATGGAGCTGAGTAACAAAGCAATTTCTGAGCTCATTCAAGATTTGGGTAACAATGCTAA
TTACGTCCAAACACTACTAATTGGCCAAGATCATAAACTGCGTTTTTCAGCAGAATCAGATTTACCCAAAACCTTACAAA
GTGAAAGTATTAGCCAAGCATTGGCAGGGAAATCAGGTGTAGGTAGTTTTAAAAACTACAATCACATCCCTGTACTCAGT
GCCTTTTCTCCACTCGATATTTTAGGTAACAAGTGGGCGTTAGTGGTTGAGTTACCAGAAAAAGAAGCCTTTGCACGCAT
TACTGAGTTAGAGAAAATCTTTGGCTTTGGCATGATCACCGCCATTCTCTTGGTAATTTTCGTCTCTCACCTACTTTCCA
ACTCTATTACGGCACCATTATTACGTTTAACTTGGGCTGCTGAGAAAGCCTCTGGTGGCGATCTTGATCAGATCATTGAA
GGTACTGAACGCAGCGATGAAATTGGTCGCCTTGCGATAAGCTTTTCACGTATGCAGCGCTCTATTCGTGAAAAAATTGG
TCTAATAAAAACCCAAAATGATGAGCTAGAACAGAGCCTTAAGATCATCCAGCAGAAAAATGATGAGCTACAAACCGCTG
ATAAACTAAAAGATGAATTTCTTGCGACGACTTCCCATGAACTGCGTACACCGCTTCATGGCATGGTCGGCATTGCAGAA
TCCTTACTGGCAGGTGCTAATGGCCCACTACAAGATCCACAGCGTCGTCAGCTTGAAATGCTGATCAACAGTGGTCAACG
CTTAACGAACTTGGTTGATGATCTGCTGGATTATCACAAGATGCGCTATGGCGATCTTGATATTCATCGCCATGCTATTG
ATTTATCAGCAGCTGTACGTTTGGTTTTAGAACTTTCAAGCCATCTATTAGGTAATAAGCCAGTACGTATTATTAACCAA
ATACCAGCGGATTTACCGCTGGTTGATGCCGATGAACAGCGTCTAGAACAAGTGCTATACAACCTTGTTGGTAATGCGAT
TAAGTACACATCTGAAGGGAAAATTATTATCTCTGCCACTGTGCTTGAGCAGCAATTACGAGTACAAGTCGTCGATACAG
GCCAAGGTATTCCTAGTGAGCAGCTTGAGCATATCTTTGAGCCATTGATCCAAGCGAATTCTGGCTCGGCTAATTATCGT
CAAGGGGCTGGGCTTGGGCTATCAATCAGCCGCCAACTGATTGAATTAATGGGTGGTCGTTTATACGTCAGCAGTCAGCC
AATGGTCGGTACAACCTTTAGCTTTACCTTGAATTTGGCGACAGAGGCGCAAATTAATGCGATATCTCACGAGTCCACCA
GCCAACATTTCCAAGCACCATCATTAGATTCAAGCAGTTGTGAAAGCAGTAACTTACCAGAAAACCCTAATGGTGACTTG
ATTCTAATCGTTGATGACGAGCCTGTTAACCTACAGATCCTCAATAACTTTTTACGTTTGGCTGGGTATCGTGTGAAAAC
GGCAGAAAATGGTCCACAAGCACTAGCAATGGTAGAAGAGCAACGTCCAGATCTGATTTTGCTCGACATTATGATGCCAG
AAATGAGTGGCTATGAAGTTTGTACAATCCTAAGAAAGCAATACTCTATTTTTGAGTTGCCAATCATGATGCTGTCAGCT
TTAGGACAGATCCAGGATCGCATTAAAGGCTTTGAGTGTGGCGCCAATGACTATTTAACCAAGCCCTTTAATAAAGAAGA
GCTAATTGCTCGTATTCAAGCTTACCTACAAGCAACTAAGACTGAACATGAAAAGCAAAAGAACCAAAACTTACAGCAAG
AGATCCATCGCCGAGAGCAAGTCGAAATCAGCTTAATTGAAGCGCAAAGCCGTTTACTGGGGTTACTAGACTCCACCACA
GAAGCGATCATTTGTGTACAAAATGAAGGTCGGATTCGTTATGTAAACAGCGCTGCAGGCAAGCTATTTAAACGTCCACC
AGAGCAGCTAGAGCGCCACACAATAAGTGATATTTTAGCTGCTGAATTACCTGACACCATCACTGATAGCCACCATTACA
ATGGGAAATTGAGCTTCCTGATCGGTGAGCAAGTGCAAACACTATCAACCGATATCATTAATTTGCCACAAGAGTCAGGG
CTGAAACAGATGTTTGTATTCGACAGTCAAGGGCCATCGGCAGATCACCGTATTGGCTTATTAGAAAATGCAGTCGATAT
GTTGTCAGAGTTTGCCTTTAACGGTGATAAGAACAACCTACAGCAGCTTCGTGAGCTGGGCGGTGAATTTACTCGACTTG
CAGATAAACTCGATAGCAATAACCAAAATAAAGGCCAACAAATTCGAGAGTTGCTGGTTGAATCGATGAAAAACACCCTA
ATGCTATGGGAAAGCGAATCGAACAAAACCAAGTTTGAATTAGCAGAAGAAAGTGGTTTATGGCGTGTTTATCTAGACCG
TAGTACGTTACAAACGCGTACCTTAGATAAATATCTTCATCTTGAAACATTGCCTAAAACACCACGTTGGCGCACTGTGA
TTAATACCATGGATTATGTACTTGAACGCTGTAATCAACCAACAGCGGCACGCCAAGAGCTCGTCACCATGCGTGATAAA
CTGCACCATACCATTAGTACCAGCTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (571-680)

• Response regulator receiver domain (Response_reg) (721-833)

• HAMP domain (HAMP) (371-424)

• His Kinase A (phospho-acceptor) domain (HisKA) (457-522)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	56.283	100	0.564