Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   ACNS8M_RS01120 Genome accession   NZ_CP183239
Coordinates   251823..252149 (+) Length   108 a.a.
NCBI ID   WP_168418399.1    Uniprot ID   -
Organism   Acinetobacter sp. A2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 246823..257149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNS8M_RS01095 (ACNS8M_01075) hemC 247491..248411 (+) 921 WP_168460967.1 hydroxymethylbilane synthase -
  ACNS8M_RS01100 (ACNS8M_01080) - 248431..249210 (+) 780 WP_168418395.1 uroporphyrinogen-III synthase -
  ACNS8M_RS01105 (ACNS8M_01085) - 249207..250043 (+) 837 WP_168541816.1 hypothetical protein -
  ACNS8M_RS01110 (ACNS8M_01090) - 250044..251237 (+) 1194 WP_168525680.1 heme biosynthesis protein HemY -
  ACNS8M_RS01115 (ACNS8M_01095) - 251247..251678 (+) 432 WP_168525682.1 acyl-CoA thioesterase -
  ACNS8M_RS01120 (ACNS8M_01100) hns 251823..252149 (+) 327 WP_168418399.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACNS8M_RS01125 (ACNS8M_01105) gspN 252313..253053 (+) 741 WP_168525684.1 type II secretion system protein N -
  ACNS8M_RS01130 (ACNS8M_01110) - 253053..253892 (+) 840 WP_168541813.1 type II secretion system protein N -
  ACNS8M_RS01135 (ACNS8M_01115) gspD 253952..256207 (+) 2256 WP_168541810.1 type II secretion system secretin GspD -
  ACNS8M_RS01140 (ACNS8M_01120) - 256277..256927 (+) 651 WP_168418402.1 FHA domain-containing protein -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12179.97 Da        Isoelectric Point: 6.4172

>NTDB_id=1104728 ACNS8M_RS01120 WP_168418399.1 251823..252149(+) (hns) [Acinetobacter sp. A2]
MMPDISNLSVEELKRLQAEAEALIATKKDQAIEDAYNQIIAIADGLGLSIEQILEVGESKRKKSPRKTVEPRYRSKTNPT
DTWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1104728 ACNS8M_RS01120 WP_168418399.1 251823..252149(+) (hns) [Acinetobacter sp. A2]
ATGATGCCCGATATTAGCAATTTATCTGTTGAAGAGTTAAAGCGTTTACAAGCTGAAGCTGAAGCATTAATTGCCACGAA
AAAAGATCAAGCAATTGAAGATGCCTATAATCAAATTATCGCAATTGCAGATGGTTTAGGTTTAAGCATTGAGCAAATTC
TTGAAGTTGGCGAAAGCAAGCGTAAAAAAAGCCCACGTAAAACAGTAGAGCCACGTTATCGTAGCAAAACTAATCCAACA
GATACTTGGACGGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAATTAGAAAAAGGCGCGAAACTTGAAGATTTTCT
AATCTAA

Domains


Predicted by InterproScan.

(12-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787


Multiple sequence alignment