Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACNS8M_RS00970 Genome accession   NZ_CP183239
Coordinates   220160..221728 (-) Length   522 a.a.
NCBI ID   WP_168418369.1    Uniprot ID   -
Organism   Acinetobacter sp. A2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 215160..226728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNS8M_RS00955 (ACNS8M_00935) gpmI 215897..217444 (+) 1548 WP_168418366.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACNS8M_RS00960 (ACNS8M_00940) - 217463..218632 (+) 1170 WP_168525656.1 S41 family peptidase -
  ACNS8M_RS00965 (ACNS8M_00945) pilR 218689..220116 (-) 1428 WP_168541840.1 sigma-54-dependent transcriptional regulator Regulator
  ACNS8M_RS00970 (ACNS8M_00950) pilS 220160..221728 (-) 1569 WP_168418369.1 sensor histidine kinase Regulator
  ACNS8M_RS00975 (ACNS8M_00955) - 221781..222416 (-) 636 WP_004975702.1 response regulator -
  ACNS8M_RS00980 (ACNS8M_00960) - 222636..223727 (+) 1092 WP_168541838.1 serine hydrolase -
  ACNS8M_RS00985 (ACNS8M_00965) thrC 223842..224981 (-) 1140 WP_104852917.1 threonine synthase -
  ACNS8M_RS00990 (ACNS8M_00970) - 225039..226343 (-) 1305 WP_168460939.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59164.70 Da        Isoelectric Point: 7.7222

>NTDB_id=1104726 ACNS8M_RS00970 WP_168418369.1 220160..221728(-) (pilS) [Acinetobacter sp. A2]
MPDLKQHSELNQYHLGMWYGAYRLLIAFCLLLITLLTFQQLGSQYQHPGLYLYTLVCYFVFSCVQLISYKYIPFKSSQQL
TLFFAVDIIALSSLTFATDGPNLYLSLLFVITIFAASLLLQKRKALAITLIAMIMVIYQHFVGSLLAFSSLNNIGHSALL
AFLFWVVYGSGRIAVRRFQLLENLNFSQSLELHRLQNINRYILEQTEMGYLVLDENCHVVLSNPAACYLLGIPAQYAHST
YPLYKIQPDLFDLFKFDQLQDGEKFQFESQLSNFHVHIQVQKLKVPHQTLTLLALQDGQKINQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANTLLSGSDAAQQQLLSGMISKQAARIDKIIHDTLSMVKNKQTTPVVIQLNQFLPQLIREDLPDAAS
KIRLQLENQISILFDELQLRQVLINLIRNAIRHNSADQQAIEIHAYHQASHIYIDVQDFGSGVASQDIRYLFQPFFSTEI
NGTGLGLYLSHSFCEANQAKLSYVEQKQGACFRIKCQCPPAI

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1104726 ACNS8M_RS00970 WP_168418369.1 220160..221728(-) (pilS) [Acinetobacter sp. A2]
ATGCCAGATTTAAAACAACATTCTGAGTTAAATCAGTATCATCTTGGCATGTGGTATGGTGCGTATCGGCTTTTAATTGC
CTTTTGTTTACTGCTGATTACCCTACTCACCTTTCAGCAGCTTGGTTCACAGTATCAACATCCTGGTTTATATCTGTATA
CACTGGTCTGCTATTTTGTGTTTAGCTGTGTGCAACTGATCAGCTATAAATATATTCCCTTCAAAAGCAGCCAACAACTG
ACTCTATTTTTTGCGGTTGATATTATTGCGCTGAGTAGCCTGACTTTTGCAACCGATGGACCCAACCTCTATTTAAGTTT
ATTGTTTGTGATCACGATTTTTGCGGCATCGTTATTGCTGCAAAAACGTAAAGCCTTAGCCATCACCCTCATTGCCATGA
TTATGGTGATTTACCAACATTTTGTTGGCAGCTTACTGGCCTTTTCTTCACTGAATAATATTGGTCATAGTGCCCTGCTG
GCATTTTTATTTTGGGTGGTCTATGGCAGTGGCCGTATTGCGGTACGACGCTTTCAGCTGTTAGAAAATCTCAACTTTTC
GCAATCTTTAGAACTGCACCGCCTACAAAATATTAATCGGTATATTTTAGAACAAACGGAAATGGGTTATTTGGTGCTAG
ATGAAAATTGTCATGTGGTTTTAAGCAACCCTGCGGCCTGTTATTTATTGGGTATTCCTGCACAATACGCACACTCAACC
TATCCACTGTATAAAATTCAGCCCGATTTATTTGATCTGTTCAAATTTGACCAGTTACAAGATGGTGAAAAATTTCAGTT
TGAATCACAACTCAGCAATTTTCACGTGCATATTCAGGTGCAAAAACTCAAAGTACCGCATCAAACATTAACCTTATTGG
CACTTCAGGATGGACAAAAAATAAATCAACAAGTCCAGCAACTCAAACTGGCGGCCTTAGGGCAATTATCAGCCAGTATT
GCCCACGAAATCCGTAATCCACTGGCTGCCATTGTACAGGCCAATACGCTCCTCAGTGGCAGTGACGCAGCACAACAACA
ATTGTTGTCCGGCATGATCAGTAAACAAGCGGCCCGGATTGATAAAATTATTCACGACACCTTAAGTATGGTGAAAAACA
AACAAACCACACCTGTAGTGATTCAGCTAAACCAATTTTTGCCGCAACTCATTAGGGAAGATTTACCCGATGCTGCCAGT
AAAATTCGGCTGCAACTTGAAAATCAAATCAGTATTCTGTTTGATGAATTACAGTTACGCCAAGTGCTAATAAACCTGAT
TCGCAATGCCATTCGACACAATTCAGCAGATCAGCAAGCCATAGAAATTCATGCATATCATCAAGCAAGTCATATTTACA
TTGATGTACAGGATTTTGGCTCAGGGGTTGCCAGTCAGGATATTCGCTATCTGTTCCAACCATTTTTCAGTACCGAAATT
AATGGAACTGGTTTAGGATTATATTTATCACATAGTTTTTGCGAAGCCAATCAAGCCAAGCTAAGCTATGTAGAACAAAA
ACAAGGGGCATGTTTCAGAATTAAATGCCAATGCCCACCCGCGATTTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.792

96.743

0.588

Multiple sequence alignment