Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | HV96_RS24925 | Genome accession | NZ_CP008871 |
| Coordinates | 5170572..5173421 (+) | Length | 949 a.a. |
| NCBI ID | WP_059301272.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain W45909 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5165572..5178421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV96_RS24895 (HV96_03620) | - | 5165727..5166821 (-) | 1095 | WP_023115023.1 | IS5 family transposase | - |
| HV96_RS24900 (HV96_03615) | - | 5167206..5168285 (+) | 1080 | WP_023101524.1 | IS5 family transposase | - |
| HV96_RS33040 (HV96_33060) | - | 5168562..5168892 (+) | 331 | Protein_4846 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| HV96_RS33295 (HV96_03605) | - | 5169014..5169247 (-) | 234 | Protein_4847 | IS110 family transposase | - |
| HV96_RS24915 (HV96_03600) | - | 5169592..5169873 (+) | 282 | WP_012761384.1 | helix-turn-helix domain-containing protein | - |
| HV96_RS24920 (HV96_03595) | - | 5169909..5170478 (+) | 570 | WP_059301278.1 | Hsp20/alpha crystallin family protein | - |
| HV96_RS24925 (HV96_03590) | clpC | 5170572..5173421 (+) | 2850 | WP_059301272.1 | heat shock survival AAA family ATPase ClpK | Regulator |
| HV96_RS24930 (HV96_03585) | cls | 5173438..5174868 (+) | 1431 | WP_059301270.1 | cardiolipin synthase | - |
| HV96_RS24935 (HV96_03580) | ftsH | 5174896..5176779 (+) | 1884 | WP_023093172.1 | ATP-dependent zinc metalloprotease FtsH | - |
| HV96_RS24940 (HV96_03575) | trxC | 5176776..5177216 (+) | 441 | WP_059301268.1 | thioredoxin TrxC | - |
Sequence
Protein
Download Length: 949 a.a. Molecular weight: 104477.45 Da Isoelectric Point: 5.8104
>NTDB_id=110467 HV96_RS24925 WP_059301272.1 5170572..5173421(+) (clpC) [Pseudomonas aeruginosa strain W45909]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKRIEAKEAELKK
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKGEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKADHASARWDDKAERVVFERQEPPAKPAEPEKPDAANVAETPPSDASKPARKKKSAGGES
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKRIEAKEAELKK
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKGEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKADHASARWDDKAERVVFERQEPPAKPAEPEKPDAANVAETPPSDASKPARKKKSAGGES
Nucleotide
Download Length: 2850 bp
>NTDB_id=110467 HV96_RS24925 WP_059301272.1 5170572..5173421(+) (clpC) [Pseudomonas aeruginosa strain W45909]
ATGGCCAGAAAACAATGCCAAGTTTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGACGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGTGCGCCAGCAAAAGCGCACCGTCTCACCGCTGGAAGCCTTGTTCG
GCTCGCGCAGCGGGCTGTTCGAAGACTTCCTTGGCAGCGACTTCTTCCGCATCGGTGACGACGCACCGTCCATGGCGGCC
GATACCGACGAGGTCGTCGATGCCTCGTTCGGCGAACCCGCCCCGGCCGGTACGGGCACCGCGCGCCGTCGCGGCAGTGG
GCTCGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTGTTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGTGAGCTGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACCGTGGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTCGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCCCGCCCGGTGGCGGTGCAAGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAGCAGGACT
ATGTGGCCTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTCGGCAAGCGCATCGAGGCCAAAGAGGCCGAACTCAAGAAG
CTTGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGCAGTGCCGAAGTCAAAGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTCGTGGGCCAGGACGAAGCGGTGCGCGCGGTGGCCGATGCCGTGCGGTTGTCGCGCGCGGGCCTGCGCGAAGGCAGC
AAGCCGGTGGCGACTTTTCTGTTCCTCGGGCCGACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATACCGTGGCACGCCTGGTGGGGG
CGCCTCCGGGTTACGTCGGCTACGACGAGGGTGGCCAGCTCACCGAGAAGGTGCGGCGCAAACCCTACAGCGTGTTGCTG
CTGGACGAGATCGAGAAGGCTCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGGGCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGATCACTTCG
CGGAGGAAGGCTACAAGCCCGAGTTCGGCGCGCGTGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACTGCTCTGGCG
CGCGAGATGCTGGGTGGCGGTATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGACGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCACCCGCGAAGCCGGCCGAGCCTGAGAAGCCCGATGCCGCGAACGTGGCCGAGACGCCGCCGAGCG
ACGCGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGGCGGCGAATCTTGA
ATGGCCAGAAAACAATGCCAAGTTTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGACGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGTGCGCCAGCAAAAGCGCACCGTCTCACCGCTGGAAGCCTTGTTCG
GCTCGCGCAGCGGGCTGTTCGAAGACTTCCTTGGCAGCGACTTCTTCCGCATCGGTGACGACGCACCGTCCATGGCGGCC
GATACCGACGAGGTCGTCGATGCCTCGTTCGGCGAACCCGCCCCGGCCGGTACGGGCACCGCGCGCCGTCGCGGCAGTGG
GCTCGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTGTTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGTGAGCTGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACCGTGGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTCGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCCCGCCCGGTGGCGGTGCAAGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAGCAGGACT
ATGTGGCCTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTCGGCAAGCGCATCGAGGCCAAAGAGGCCGAACTCAAGAAG
CTTGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGCAGTGCCGAAGTCAAAGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTCGTGGGCCAGGACGAAGCGGTGCGCGCGGTGGCCGATGCCGTGCGGTTGTCGCGCGCGGGCCTGCGCGAAGGCAGC
AAGCCGGTGGCGACTTTTCTGTTCCTCGGGCCGACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATACCGTGGCACGCCTGGTGGGGG
CGCCTCCGGGTTACGTCGGCTACGACGAGGGTGGCCAGCTCACCGAGAAGGTGCGGCGCAAACCCTACAGCGTGTTGCTG
CTGGACGAGATCGAGAAGGCTCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGGGCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGATCACTTCG
CGGAGGAAGGCTACAAGCCCGAGTTCGGCGCGCGTGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACTGCTCTGGCG
CGCGAGATGCTGGGTGGCGGTATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGACGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCACCCGCGAAGCCGGCCGAGCCTGAGAAGCCCGATGCCGCGAACGTGGCCGAGACGCCGCCGAGCG
ACGCGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGGCGGCGAATCTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50.818 |
83.772 |
0.426 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.468 |
86.301 |
0.375 |
| clpC | Streptococcus thermophilus LMD-9 |
41.869 |
86.828 |
0.364 |
| clpC | Streptococcus thermophilus LMG 18311 |
41.778 |
86.512 |
0.361 |
| clpC | Streptococcus mutans UA159 |
41.963 |
85.88 |
0.36 |
| clpC | Streptococcus pneumoniae Rx1 |
42.118 |
85.564 |
0.36 |
| clpC | Streptococcus pneumoniae D39 |
42.118 |
85.564 |
0.36 |