Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACN09J_RS11415 Genome accession   NZ_CP183236
Coordinates   2221814..2223664 (-) Length   616 a.a.
NCBI ID   WP_419141088.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain BNI-2649     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2216814..2228664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN09J_RS11400 (ACN09J_11355) - 2217239..2218366 (+) 1128 WP_260909594.1 iron-containing alcohol dehydrogenase -
  ACN09J_RS11405 (ACN09J_11360) - 2218411..2220663 (-) 2253 WP_151946788.1 methyl-accepting chemotaxis protein -
  ACN09J_RS11410 (ACN09J_11365) - 2220789..2221811 (-) 1023 WP_152054737.1 alanine racemase -
  ACN09J_RS11415 (ACN09J_11370) uvrC 2221814..2223664 (-) 1851 WP_419141088.1 excinuclease ABC subunit UvrC Machinery gene
  ACN09J_RS11420 (ACN09J_11375) - 2223821..2226214 (+) 2394 WP_419243941.1 methyl-accepting chemotaxis protein -
  ACN09J_RS11425 (ACN09J_11380) - 2226568..2228571 (+) 2004 WP_157277631.1 HAMP domain-containing methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72237.43 Da        Isoelectric Point: 9.2189

>NTDB_id=1104633 ACN09J_RS11415 WP_419141088.1 2221814..2223664(-) (uvrC) [Aliarcobacter butzleri strain BNI-2649]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDKEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNENLNAFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1104633 ACN09J_RS11415 WP_419141088.1 2221814..2223664(-) (uvrC) [Aliarcobacter butzleri strain BNI-2649]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCGGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTACATAGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTGGAAAGTTGCGAATGGATTGTTGTACCAAATGAACATGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATTTTGCTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGACTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCATTAGTACAAAAGAAATCTTGT
GTAAAAGGTAAAAAAGCCTGTCTTTTCCATCAAATACAAAAATGTTTAGCGCCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGGTTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGGTATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATCGT
AAGAATGTTTTTAAGAGATGGTAAATTAACTTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATAAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTGCCAAAAGAGATT
TTGATTGCCCATGAACTTGAAATAACAAATGAATTAGAAGAGTTTTTACATACAAGATTTAATAAAAAAATTAAACTAAT
CAATCCTAAAAAAGATAAAAAAAGAGAAATTGTAAATATAGCTTTAAATAACTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGTTGTTTAATCTTCAAACTCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAATTTAAATGCTTTTGATAAAAA
AGCTTTTAGGCATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAGAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATAGATGGAGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATTATTGCAATAGCAAAAGAAAAAATTGATGCGAAAGCCCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATTAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAACGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.405

97.89

0.513

Multiple sequence alignment