Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACAK36_RS10495 Genome accession   NZ_AP031585
Coordinates   2146613..2147254 (-) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain JUNP543     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2141613..2152254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK36_RS10475 (JUNP543_2096) aroK 2142524..2143093 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACAK36_RS10480 (JUNP543_2097) pilQ 2143105..2145270 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ACAK36_RS10485 (JUNP543_2098) pilP 2145338..2145865 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ACAK36_RS10490 (JUNP543_2099) pilO 2145876..2146616 (-) 741 WP_049581056.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACAK36_RS10495 (JUNP543_2100) pilN 2146613..2147254 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  ACAK36_RS10500 (JUNP543_2101) pilM 2147254..2148312 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACAK36_RS10505 (JUNP543_2102) ponA 2148474..2151029 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  ACAK36_RS10510 (JUNP543_2103) - 2151047..2151871 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  ACAK36_RS10515 (JUNP543_2104) - 2151874..2152206 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=110458 ACAK36_RS10495 WP_000201223.1 2146613..2147254(-) (pilN) [Acinetobacter baumannii strain JUNP543]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=110458 ACAK36_RS10495 WP_000201223.1 2146613..2147254(-) (pilN) [Acinetobacter baumannii strain JUNP543]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment