Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACKT82_RS00460 Genome accession   NZ_CP183161
Coordinates   108519..109148 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 605     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 103519..114148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKT82_RS00440 (ACKT82_00440) ycbZ 103920..105680 (-) 1761 WP_000152888.1 AAA family ATPase -
  ACKT82_RS00445 (ACKT82_00445) matP 105866..106318 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACKT82_RS00450 (ACKT82_00450) ompA 106394..107434 (-) 1041 WP_000750416.1 porin OmpA -
  ACKT82_RS00455 (ACKT82_00455) sulA 107791..108300 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACKT82_RS00460 (ACKT82_00460) sxy/tfoX 108519..109148 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACKT82_RS00465 (ACKT82_00465) yccS 109111..111273 (-) 2163 WP_000875058.1 YccS family putative transporter -
  ACKT82_RS00470 (ACKT82_00470) yccF 111283..111729 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACKT82_RS00475 (ACKT82_00475) helD 111852..113906 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1104290 ACKT82_RS00460 WP_000839153.1 108519..109148(+) (sxy/tfoX) [Escherichia coli strain 605]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1104290 ACKT82_RS00460 WP_000839153.1 108519..109148(+) (sxy/tfoX) [Escherichia coli strain 605]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment