Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACKVDO_RS08445 Genome accession   NZ_CP183138
Coordinates   1785047..1785676 (+) Length   209 a.a.
NCBI ID   WP_106464856.1    Uniprot ID   -
Organism   Escherichia coli strain 774     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780047..1790676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVDO_RS08425 (ACKVDO_08390) ycbZ 1780448..1782208 (-) 1761 WP_000156526.1 AAA family ATPase -
  ACKVDO_RS08430 (ACKVDO_08395) matP 1782394..1782846 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACKVDO_RS08435 (ACKVDO_08400) ompA 1782922..1783962 (-) 1041 WP_000750416.1 porin OmpA -
  ACKVDO_RS08440 (ACKVDO_08405) sulA 1784319..1784828 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACKVDO_RS08445 (ACKVDO_08410) sxy/tfoX 1785047..1785676 (+) 630 WP_106464856.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACKVDO_RS08450 (ACKVDO_08415) yccS 1785639..1787801 (-) 2163 WP_000875020.1 YccS family putative transporter -
  ACKVDO_RS08455 (ACKVDO_08420) yccF 1787811..1788257 (-) 447 WP_001261231.1 YccF domain-containing protein -
  ACKVDO_RS08460 (ACKVDO_08425) helD 1788380..1790434 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24193.10 Da        Isoelectric Point: 9.0428

>NTDB_id=1104228 ACKVDO_RS08445 WP_106464856.1 1785047..1785676(+) (sxy/tfoX) [Escherichia coli strain 774]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLECAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1104228 ACKVDO_RS08445 WP_106464856.1 1785047..1785676(+) (sxy/tfoX) [Escherichia coli strain 774]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAATGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment