Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACKVCM_RS16465 Genome accession   NZ_CP183123
Coordinates   3349638..3350267 (-) Length   209 a.a.
NCBI ID   WP_106464856.1    Uniprot ID   -
Organism   Escherichia coli strain 613     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3344638..3355267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVCM_RS16450 (ACKVCM_16435) helD 3344880..3346934 (-) 2055 WP_000420533.1 DNA helicase IV -
  ACKVCM_RS16455 (ACKVCM_16440) yccF 3347057..3347503 (+) 447 WP_001261231.1 YccF domain-containing protein -
  ACKVCM_RS16460 (ACKVCM_16445) yccS 3347513..3349675 (+) 2163 WP_000875020.1 YccS family putative transporter -
  ACKVCM_RS16465 (ACKVCM_16450) sxy/tfoX 3349638..3350267 (-) 630 WP_106464856.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACKVCM_RS16470 (ACKVCM_16455) sulA 3350486..3350995 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACKVCM_RS16475 (ACKVCM_16460) ompA 3351352..3352392 (+) 1041 WP_000750416.1 porin OmpA -
  ACKVCM_RS16480 (ACKVCM_16465) matP 3352468..3352920 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACKVCM_RS16485 (ACKVCM_16470) ycbZ 3353106..3354866 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24193.10 Da        Isoelectric Point: 9.0428

>NTDB_id=1104198 ACKVCM_RS16465 WP_106464856.1 3349638..3350267(-) (sxy/tfoX) [Escherichia coli strain 613]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLECAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1104198 ACKVCM_RS16465 WP_106464856.1 3349638..3350267(-) (sxy/tfoX) [Escherichia coli strain 613]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAATGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment