Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACKVBZ_RS12635 Genome accession   NZ_CP183114
Coordinates   2571231..2571860 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 492     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2566231..2576860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKVBZ_RS12620 (ACKVBZ_12600) helD 2566473..2568527 (-) 2055 WP_000420536.1 DNA helicase IV -
  ACKVBZ_RS12625 (ACKVBZ_12605) yccF 2568650..2569096 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACKVBZ_RS12630 (ACKVBZ_12610) yccS 2569106..2571268 (+) 2163 WP_000875015.1 YccS family putative transporter -
  ACKVBZ_RS12635 (ACKVBZ_12615) sxy/tfoX 2571231..2571860 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACKVBZ_RS12640 (ACKVBZ_12620) sulA 2572079..2572588 (+) 510 WP_106474577.1 SOS-induced cell division inhibitor SulA -
  ACKVBZ_RS12645 (ACKVBZ_12625) ompA 2572945..2573997 (+) 1053 WP_000750419.1 porin OmpA -
  ACKVBZ_RS12650 (ACKVBZ_12630) matP 2574072..2574524 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ACKVBZ_RS12655 (ACKVBZ_12635) ycbZ 2574710..2576470 (+) 1761 WP_106474576.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1104147 ACKVBZ_RS12635 WP_000839153.1 2571231..2571860(-) (sxy/tfoX) [Escherichia coli strain 492]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1104147 ACKVBZ_RS12635 WP_000839153.1 2571231..2571860(-) (sxy/tfoX) [Escherichia coli strain 492]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GAGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment