Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACAK38_RS01665 Genome accession   NZ_AP031583
Coordinates   352206..353024 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain JUNP514     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347206..358024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK38_RS01630 - 347788..347918 (-) 131 Protein_312 hypothetical protein -
  ACAK38_RS01635 (JUNP514_0325) rpoZ 347957..348235 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACAK38_RS01640 (JUNP514_0326) gmk 348308..348937 (-) 630 WP_000015937.1 guanylate kinase -
  ACAK38_RS01645 (JUNP514_0327) ispH 349060..350010 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACAK38_RS01650 (JUNP514_0328) fimU 350180..350653 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACAK38_RS01655 (JUNP514_0329) pilV 350647..351207 (+) 561 WP_369604027.1 type IV pilus modification protein PilV Machinery gene
  ACAK38_RS01660 (JUNP514_0330) pilW 351208..352209 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ACAK38_RS01665 (JUNP514_0331) pilX 352206..353024 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACAK38_RS01670 (JUNP514_0332) pilY1 353036..356890 (+) 3855 WP_045543713.1 PilC/PilY family type IV pilus protein Machinery gene
  ACAK38_RS01675 (JUNP514_0333) pilY2 356903..357385 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ACAK38_RS01680 (JUNP514_0334) pilE 357382..357807 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=110400 ACAK38_RS01665 WP_000149374.1 352206..353024(+) (pilX) [Acinetobacter baumannii strain JUNP514]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=110400 ACAK38_RS01665 WP_000149374.1 352206..353024(+) (pilX) [Acinetobacter baumannii strain JUNP514]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment