Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNOIU_RS00505 Genome accession   NZ_CP183077
Coordinates   98081..99457 (+) Length   458 a.a.
NCBI ID   WP_021066579.1    Uniprot ID   U1MZL5
Organism   Exiguobacterium mexicanum strain PY14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 93081..104457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNOIU_RS00485 (ACNOIU_00485) - 93602..94069 (+) 468 WP_114166644.1 CtsR family transcriptional regulator -
  ACNOIU_RS00490 (ACNOIU_00490) - 94089..94523 (+) 435 WP_214797789.1 UvrB/UvrC motif-containing protein -
  ACNOIU_RS00495 (ACNOIU_00495) - 94523..95566 (+) 1044 WP_286038522.1 protein arginine kinase -
  ACNOIU_RS00500 (ACNOIU_00500) clpC 95591..98026 (+) 2436 WP_286038523.1 ATP-dependent protease ATP-binding subunit ClpC -
  ACNOIU_RS00505 (ACNOIU_00505) radA 98081..99457 (+) 1377 WP_021066579.1 DNA repair protein RadA Machinery gene
  ACNOIU_RS00510 (ACNOIU_00510) - 99573..100637 (+) 1065 WP_021066580.1 PIN/TRAM domain-containing protein -
  ACNOIU_RS00515 (ACNOIU_00515) ispD 100696..101376 (+) 681 WP_286038524.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACNOIU_RS00520 (ACNOIU_00520) ispF 101373..101846 (+) 474 WP_021066582.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACNOIU_RS00525 (ACNOIU_00525) gltX 101892..103349 (+) 1458 WP_286038530.1 glutamate--tRNA ligase -
  ACNOIU_RS00530 (ACNOIU_00530) cysE 103599..104288 (+) 690 WP_214720354.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49857.36 Da        Isoelectric Point: 6.3235

>NTDB_id=1103999 ACNOIU_RS00505 WP_021066579.1 98081..99457(+) (radA) [Exiguobacterium mexicanum strain PY14]
MAKIKTKYVCQSCGYESAKWMGRCPGCNEWNTLVEEFVEEKKAKRGAAFVHSSSRQLKPERLSDVVSQEETRVHTNSQEF
DRVLGGGIVPGSLVLVGGDPGIGKSTILLQVSAHLAHSGRKVLYISGEESLKQTKLRAERLGLPTEDLYVLAETDMLMIE
RVIDEEEPGFVIIDSIQTVYMDEIQSAPGSVAQVRECTAALMKIAKTRGVAVFIVGHVTKQGSIAGPRLLEHMVDAVLYF
EGERHHTFRILRAVKNRFGSTNEIGIFEMKEGGLEEVLNPSEIFLEERTAGVSGSTVVASMEGTRTVLVELQALISPTSF
GNPRRMATGIDQNRVALLMAVLEKRSGLLLQTQDAYLKAAGGVKLDEPAIDLAICISIASSFRDRPTRPTDVCIGEVGLT
GEVRRVSRIEQRVAEAAKLGFTRAIIPKNNLGGWTAPPGIDVVGVSTVDEALQLAIPF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1103999 ACNOIU_RS00505 WP_021066579.1 98081..99457(+) (radA) [Exiguobacterium mexicanum strain PY14]
ATGGCAAAAATTAAAACGAAGTACGTATGTCAGTCATGTGGATACGAATCCGCAAAATGGATGGGACGTTGCCCAGGTTG
TAACGAGTGGAATACGCTCGTCGAAGAATTTGTCGAAGAGAAAAAGGCGAAGCGGGGAGCCGCATTCGTCCATAGCTCCT
CGAGGCAGTTGAAGCCAGAACGTCTGTCGGACGTCGTGTCGCAAGAAGAGACGCGCGTCCATACGAATAGTCAAGAGTTT
GACCGTGTGCTTGGGGGCGGGATTGTCCCGGGCTCGCTCGTCCTCGTCGGTGGGGACCCGGGAATCGGGAAGTCGACGAT
TCTGCTTCAAGTGAGTGCCCATTTGGCTCATAGTGGACGGAAAGTGCTCTATATTTCCGGGGAAGAATCGCTCAAACAGA
CGAAACTCCGAGCCGAACGGCTCGGTCTGCCGACTGAAGACTTATATGTCCTCGCAGAGACGGACATGTTGATGATTGAA
CGGGTCATCGATGAAGAAGAACCGGGGTTCGTCATCATCGACTCGATTCAAACCGTTTATATGGATGAAATTCAATCAGC
GCCAGGTAGTGTCGCTCAAGTCCGAGAATGTACGGCGGCGCTCATGAAAATCGCTAAAACGCGAGGAGTGGCCGTCTTTA
TCGTCGGTCACGTGACGAAACAAGGTTCGATTGCCGGCCCTCGTCTGCTCGAGCATATGGTGGATGCGGTCCTTTACTTT
GAAGGGGAGCGTCACCATACGTTCCGAATTTTACGGGCCGTCAAAAACCGATTTGGATCGACGAACGAGATTGGCATCTT
TGAAATGAAAGAAGGCGGGCTCGAAGAAGTGCTCAATCCGTCTGAAATCTTCCTGGAAGAACGAACTGCTGGCGTCTCGG
GCTCCACCGTCGTCGCATCGATGGAAGGGACGCGGACCGTGCTCGTCGAGTTACAGGCACTCATCTCGCCGACCTCGTTC
GGGAACCCGCGCCGGATGGCGACCGGGATTGACCAGAACCGGGTCGCACTTCTCATGGCCGTGCTCGAGAAGCGTTCGGG
TCTCTTGCTCCAAACGCAAGACGCTTATTTGAAGGCGGCCGGGGGCGTTAAATTGGACGAACCGGCCATCGACTTGGCCA
TCTGTATTTCAATCGCGTCAAGCTTCCGGGACCGTCCGACCCGTCCGACGGATGTATGTATCGGTGAAGTCGGTTTGACC
GGTGAGGTACGGCGTGTGTCACGGATTGAGCAACGTGTCGCTGAAGCGGCCAAGCTTGGTTTCACCCGGGCCATCATTCC
GAAAAACAACCTCGGGGGCTGGACGGCCCCGCCTGGTATCGATGTCGTCGGTGTCAGTACTGTCGATGAAGCGCTCCAAC
TCGCTATCCCATTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U1MZL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.246

99.563

0.729
  radA Streptococcus mitis NCTC 12261

61.589

98.908

0.609
  radA Streptococcus pneumoniae Rx1

61.589

98.908

0.609
  radA Streptococcus pneumoniae D39

61.589

98.908

0.609
  radA Streptococcus pneumoniae R6

61.589

98.908

0.609
  radA Streptococcus pneumoniae TIGR4

61.589

98.908

0.609
  radA Streptococcus mitis SK321

61.589

98.908

0.609

Multiple sequence alignment