Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HV97_RS29500 Genome accession   NZ_CP008870
Coordinates   6194716..6195240 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain W36662     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6189716..6200240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV97_RS29485 (HV97_25795) aroB 6190832..6191938 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  HV97_RS29490 (HV97_25800) aroK 6191988..6192506 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HV97_RS29495 (HV97_25805) pilQ 6192518..6194662 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  HV97_RS29500 (HV97_25810) comL/pilP 6194716..6195240 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HV97_RS29505 (HV97_25815) pilO 6195237..6195860 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HV97_RS29510 (HV97_25820) pilN 6195857..6196453 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HV97_RS29515 (HV97_25825) pilM 6196453..6197517 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HV97_RS29520 (HV97_25830) - 6197702..6200173 (+) 2472 WP_016562439.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=110382 HV97_RS29500 WP_003095836.1 6194716..6195240(-) (comL/pilP) [Pseudomonas aeruginosa strain W36662]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=110382 HV97_RS29500 WP_003095836.1 6194716..6195240(-) (comL/pilP) [Pseudomonas aeruginosa strain W36662]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment