Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACNM7T_RS08400 Genome accession   NZ_CP183041
Coordinates   1647981..1648880 (+) Length   299 a.a.
NCBI ID   WP_094031704.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Scm     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1642981..1653880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS08380 (ACNM7T_08380) - 1643671..1645374 (+) 1704 WP_052827416.1 hypothetical protein -
  ACNM7T_RS08385 (ACNM7T_08385) - 1645371..1645652 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  ACNM7T_RS08390 (ACNM7T_08390) sucC 1645827..1646984 (+) 1158 WP_416806580.1 ADP-forming succinate--CoA ligase subunit beta -
  ACNM7T_RS08395 (ACNM7T_08395) sucD 1647013..1647915 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  ACNM7T_RS08400 (ACNM7T_08400) dprA 1647981..1648880 (+) 900 WP_094031704.1 DNA-processing protein DprA Machinery gene
  ACNM7T_RS08405 (ACNM7T_08405) topA 1649062..1651137 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  ACNM7T_RS08410 (ACNM7T_08410) trmFO 1651202..1652509 (+) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACNM7T_RS08415 (ACNM7T_08415) xerC 1652579..1653496 (+) 918 WP_032871470.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32864.03 Da        Isoelectric Point: 8.1570

>NTDB_id=1103782 ACNM7T_RS08400 WP_094031704.1 1647981..1648880(+) (dprA) [Bacillus amyloliquefaciens strain Scm]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1103782 ACNM7T_RS08400 WP_094031704.1 1647981..1648880(+) (dprA) [Bacillus amyloliquefaciens strain Scm]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment