Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACNM7T_RS07550 Genome accession   NZ_CP183041
Coordinates   1432787..1433071 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Scm     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427787..1438071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS07530 (ACNM7T_07530) - 1429030..1429938 (+) 909 WP_038463811.1 ketopantoate reductase family protein -
  ACNM7T_RS07535 (ACNM7T_07535) - 1429970..1431202 (-) 1233 WP_007409644.1 aminopeptidase -
  ACNM7T_RS07540 (ACNM7T_07540) - 1431303..1431437 (-) 135 WP_012117458.1 protein YkpC -
  ACNM7T_RS07545 (ACNM7T_07545) mreBH 1431509..1432516 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  ACNM7T_RS07550 (ACNM7T_07550) abrB 1432787..1433071 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACNM7T_RS07555 (ACNM7T_07555) - 1433244..1434548 (+) 1305 WP_234631202.1 ATP-binding protein -
  ACNM7T_RS07560 (ACNM7T_07560) - 1434550..1435377 (+) 828 WP_038463814.1 gamma-glutamylcyclotransferase -
  ACNM7T_RS07565 (ACNM7T_07565) ktrC 1435418..1436083 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  ACNM7T_RS07570 (ACNM7T_07570) ade 1436231..1437964 (+) 1734 WP_038463817.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=1103781 ACNM7T_RS07550 WP_003154557.1 1432787..1433071(+) (abrB) [Bacillus amyloliquefaciens strain Scm]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1103781 ACNM7T_RS07550 WP_003154557.1 1432787..1433071(+) (abrB) [Bacillus amyloliquefaciens strain Scm]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment