Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACAK34_RS01905 Genome accession   NZ_AP031582
Coordinates   396704..397522 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain JUNP499     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391704..402522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK34_RS01870 - 392286..392416 (-) 131 Protein_360 hypothetical protein -
  ACAK34_RS01875 (JUNP499_0382) rpoZ 392455..392733 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACAK34_RS01880 (JUNP499_0383) gmk 392806..393435 (-) 630 WP_000015936.1 guanylate kinase -
  ACAK34_RS01885 (JUNP499_0384) ispH 393558..394508 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACAK34_RS01890 (JUNP499_0385) fimU 394678..395151 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACAK34_RS01895 (JUNP499_0386) pilV 395145..395705 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACAK34_RS01900 (JUNP499_0387) pilW 395706..396707 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  ACAK34_RS01905 (JUNP499_0388) pilX 396704..397522 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACAK34_RS01910 (JUNP499_0389) pilY1 397534..401388 (+) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  ACAK34_RS01915 (JUNP499_0390) pilY2 401401..401883 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  ACAK34_RS01920 (JUNP499_0391) pilE 401880..402305 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=110353 ACAK34_RS01905 WP_000149374.1 396704..397522(+) (pilX) [Acinetobacter baumannii strain JUNP499]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=110353 ACAK34_RS01905 WP_000149374.1 396704..397522(+) (pilX) [Acinetobacter baumannii strain JUNP499]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment