Detailed information NTG1103416

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACNH6H_RS16065
• Genome accession: NZ_CP182947
• Coordinates: 3509805..3511019 (+)
• Length: 404 a.a.
• NCBI ID: WP_418319063.1
• Uniprot ID: -
• Organism: Piscinibacter sakaiensis strain 201-F6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3501045..3509559	3509805..3511019	flank	246

Gene organization within MGE regions

Location: 3501045..3511019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNH6H_RS16025 (ACNH6H_16025)	-	3501045..3502691 (-)	1647	WP_418319054.1	DNA cytosine methyltransferase	-
ACNH6H_RS16030 (ACNH6H_16030)	istA	3503106..3504599 (+)	1494	WP_418319056.1	IS21 family transposase	-
ACNH6H_RS16035 (ACNH6H_16035)	istB	3504596..3505414 (+)	819	WP_418319057.1	IS21-like element helper ATPase IstB	-
ACNH6H_RS16040 (ACNH6H_16040)	-	3505710..3506006 (-)	297	WP_418319058.1	hypothetical protein	-
ACNH6H_RS16045 (ACNH6H_16045)	-	3505982..3506686 (-)	705	WP_418319060.1	AAA family ATPase	-
ACNH6H_RS16050 (ACNH6H_16050)	-	3506683..3507687 (-)	1005	WP_418319061.1	hypothetical protein	-
ACNH6H_RS16055 (ACNH6H_16055)	-	3507757..3509559 (-)	1803	WP_418319062.1	tyrosine-type recombinase/integrase	-
ACNH6H_RS16065 (ACNH6H_16065)	pilA	3509805..3511019 (+)	1215	WP_418319063.1	signal recognition particle-docking protein FtsY	Machinery gene

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 42751.88 Da
• Isoelectric Point: 6.6702

>NTDB_id=1103416 ACNH6H_RS16065 WP_418319063.1 3509805..3511019(+) (pilA) [Piscinibacter sakaiensis strain 201-F6]
MFSFFKKRKAAAAEAAAKAAQQGPSAEELEAASINVSKRSAEPATEEPAHDPFAFLAEPLPGPSAEEISAQIAAEIAARE
AWRKKLRGGLRKTGSALSAVFTTTKVDEQLYEELEAALLMSDTGVKATQFLLDDLRRRVKQARETDPMKVKELLSEAIVD
LLQPLEKALVVGQYSPTVMMVVGVNGAGKTTSIGKLTRYLSDHGQKVLLAAADTFRAAAREQLAVWAERSDAHSAGGARA
AGLAPPAPVEFVSQTGGDPAAVAFDAVAAGRARRSDVVIADTAGRLPTQLHLMEELKKIKRVITKAQPDAPHEVLLVIDG
NTGQNALSQVKAFDEALQLTGLIVTKLDGTAKGGVMAAIALWSRERAAAKPGAGGVPIYFIGVGEQLEDLQTFNAREFAQ
ALLG

Nucleotide

• Length: 1215 bp

>NTDB_id=1103416 ACNH6H_RS16065 WP_418319063.1 3509805..3511019(+) (pilA) [Piscinibacter sakaiensis strain 201-F6]
ATGTTCAGTTTTTTCAAAAAGCGCAAGGCGGCTGCTGCCGAGGCAGCGGCCAAGGCTGCGCAACAGGGGCCGTCAGCCGA
AGAGCTCGAAGCCGCTTCGATCAATGTCTCGAAGCGCAGTGCCGAGCCTGCAACCGAGGAGCCGGCACACGACCCGTTTG
CCTTCCTTGCCGAGCCATTGCCCGGGCCGAGTGCCGAGGAGATCTCGGCGCAGATCGCTGCCGAGATTGCCGCCCGCGAG
GCCTGGCGCAAGAAGCTGCGCGGCGGCCTGCGCAAGACCGGCTCGGCGCTGTCGGCGGTTTTCACGACGACCAAGGTCGA
CGAGCAGCTGTATGAGGAGCTCGAAGCGGCGTTGCTGATGTCGGATACCGGCGTGAAGGCGACGCAGTTCCTGCTCGACG
ATCTGCGGCGCCGCGTCAAGCAGGCGCGAGAGACCGACCCGATGAAGGTGAAGGAGTTGTTGTCCGAAGCGATCGTCGAT
CTGCTGCAGCCGCTCGAGAAGGCGCTGGTCGTCGGCCAGTATTCGCCGACGGTGATGATGGTGGTCGGTGTCAATGGCGC
CGGCAAGACGACCAGCATCGGCAAGCTGACCCGTTATCTGTCCGACCACGGCCAGAAGGTGCTGCTGGCCGCCGCCGATA
CCTTCCGCGCTGCCGCGCGCGAGCAGCTGGCCGTATGGGCCGAACGGTCCGATGCCCATTCGGCCGGTGGCGCACGCGCG
GCCGGCCTGGCACCGCCGGCACCGGTTGAATTTGTCAGCCAGACCGGTGGCGACCCGGCGGCAGTTGCCTTCGACGCGGT
CGCTGCCGGCCGCGCGCGGCGCAGCGATGTCGTGATCGCGGATACGGCGGGCCGATTGCCGACCCAGCTGCATCTGATGG
AAGAGCTGAAGAAGATCAAGCGCGTGATCACGAAGGCACAACCGGATGCGCCGCACGAGGTGCTGCTGGTGATCGACGGC
AATACCGGCCAGAACGCACTGAGTCAGGTCAAGGCCTTCGACGAGGCGCTGCAGCTGACCGGCCTGATCGTCACCAAGCT
CGACGGCACCGCCAAAGGCGGCGTGATGGCGGCGATTGCCTTGTGGTCACGCGAGCGCGCGGCGGCCAAGCCCGGCGCCG
GTGGCGTGCCGATCTATTTCATCGGCGTCGGCGAGCAGCTCGAAGACCTGCAGACCTTCAATGCCCGCGAGTTTGCGCAG
GCGCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (95-157)

• SRP54-type protein, GTPase domain (SRP54) (176-404)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	44.395	100	0.49