Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNSOL_RS11200 Genome accession   NZ_CP182894
Coordinates   2211144..2212493 (-) Length   449 a.a.
NCBI ID   WP_418180516.1    Uniprot ID   -
Organism   Aliarcobacter lanthieri strain BNI-4366     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2206144..2217493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOL_RS11180 (ACNSOL_11180) murJ 2207166..2208488 (-) 1323 WP_418180514.1 murein biosynthesis integral membrane protein MurJ -
  ACNSOL_RS11185 (ACNSOL_11185) - 2208485..2210056 (-) 1572 WP_418180515.1 endonuclease/exonuclease/phosphatase family protein -
  ACNSOL_RS11190 (ACNSOL_11190) - 2210247..2210651 (+) 405 WP_113872021.1 Fur family transcriptional regulator -
  ACNSOL_RS11195 (ACNSOL_11195) ybeY 2210669..2211088 (-) 420 WP_202267671.1 rRNA maturation RNase YbeY -
  ACNSOL_RS11200 (ACNSOL_11200) radA 2211144..2212493 (-) 1350 WP_418180516.1 DNA repair protein RadA Machinery gene
  ACNSOL_RS11205 (ACNSOL_11205) - 2212610..2213170 (+) 561 WP_418180517.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ACNSOL_RS11210 (ACNSOL_11210) - 2213232..2214146 (+) 915 WP_202267667.1 cytochrome-c peroxidase -
  ACNSOL_RS11215 (ACNSOL_11215) - 2214130..2215836 (+) 1707 WP_113872026.1 diguanylate cyclase domain-containing protein -
  ACNSOL_RS11220 (ACNSOL_11220) - 2215845..2216711 (-) 867 WP_418180518.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49371.93 Da        Isoelectric Point: 6.1932

>NTDB_id=1103255 ACNSOL_RS11200 WP_418180516.1 2211144..2212493(-) (radA) [Aliarcobacter lanthieri strain BNI-4366]
MAKKKITLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEVLKQSIKVSSSTSKAKPITEILQDDVTRFSSFNYEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIANSGKKVLYVSGEESAGQIKLRANRLEANSENLFLLSEIKLEEILD
ELLRVDYEVCIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNLAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTSEGLISAKDIASKFFDKSKSQSGSSLTVSMEGSRAIILEVQALVCETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAIIAQKINLKLDLKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1103255 ACNSOL_RS11200 WP_418180516.1 2211144..2212493(-) (radA) [Aliarcobacter lanthieri strain BNI-4366]
ATGGCAAAAAAGAAAATTACACTTTTTGAGTGTCAGCACTGTGGAGAACAATCTACAAAATGGCTTGGTAAATGTCCAAA
TTGTGGTTCTTGGGATAGCTTTATAGAATTAAATCAAGAGCAACAAGAAGTTTTAAAACAATCTATAAAAGTTTCTAGTT
CTACTTCAAAAGCAAAACCAATTACAGAAATTTTACAAGATGATGTTACAAGATTTTCATCTTTTAACTATGAATTTGAT
TTAGTTTTAGGTGGAGGAATAGTTCCTGGAAGCCTTACTTTAATAGGAGGAAGTCCAGGAGTTGGTAAATCTACACTTTT
ATTAAAAGTTGCAGGGAGCATTGCAAATAGTGGGAAAAAAGTTCTTTATGTTTCAGGAGAAGAAAGTGCAGGACAGATAA
AATTAAGAGCAAATAGACTTGAAGCAAATAGTGAAAATCTATTTTTATTAAGTGAAATAAAACTTGAAGAAATTTTAGAT
GAACTTCTTAGGGTTGATTATGAAGTTTGTATTATTGATTCTATTCAAACAATATATTCTTCAAATCTTACATCAGCACC
AGGAAGTGTATCTCAAGTTAGAGAAATAACATTTGAACTTATGAGAAAAGCAAAAGAATCAAATCTTGCTATGTTTATTA
TTGGGCATATTACAAAGGATGGAAGTATTGCAGGTCCTAGAGTTTTAGAACATATGGTTGATACTGTTTTATATTTTGAA
GGAGAAGCAAGTCGTGAATTAAGAATGCTTCGTGGATTTAAGAACAGATTTGGAAGTACAAGCGAAATTGGTATTTTTGA
AATGACATCAGAAGGATTAATAAGTGCAAAAGATATAGCTTCAAAATTTTTTGACAAAAGCAAATCTCAAAGTGGATCAA
GTTTAACTGTAAGTATGGAGGGGAGTCGTGCAATAATACTTGAAGTTCAAGCACTGGTTTGTGAGACAACATTCCCAAAT
CCAAAAAGAAGTGCAACAGGATTTGATACAAACCGTTTAACTATGCTTTTAGCACTTTTAGAGAAAAAATTAGACTTACC
TTTTAATCACTACGATGTTTTTATAAATATTAGTGGAGGTATAAAAATAAAAGAAAGTAGTGCTGATTTAGCTGTAATTG
CTGCAATAATATCTAGTTTTAGAGATAGACCAATCTCAAAAGAGTCTGTTTTTATAGGTGAAGTGAGTCTAACAGGAGAA
ATAAAAGATGTTTACTCTATTGATTTAAGACTAAAAGAAGCTCAAGCACAAGGTATAAAAAAAGCAATAATTGCTCAAAA
AATAAATTTAAAACTAGATTTAAAAACTTTTGCAGTAGATGAAGTATCAAAGATGATTGAACTATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

AAA domain (AAA_25)

(82-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.577

100

0.481
  radA Streptococcus pneumoniae Rx1

47.577

100

0.481
  radA Streptococcus pneumoniae D39

47.577

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.481
  radA Streptococcus mitis SK321

47.357

100

0.479
  radA Bacillus subtilis subsp. subtilis str. 168

49.535

95.768

0.474
  radA Streptococcus mitis NCTC 12261

49.65

95.546

0.474

Multiple sequence alignment