Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACNSOL_RS09975 Genome accession   NZ_CP182894
Coordinates   1961427..1963268 (-) Length   613 a.a.
NCBI ID   WP_418180353.1    Uniprot ID   -
Organism   Aliarcobacter lanthieri strain BNI-4366     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1956427..1968268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOL_RS09960 (ACNSOL_09960) - 1956861..1957988 (+) 1128 WP_418180350.1 iron-containing alcohol dehydrogenase -
  ACNSOL_RS09965 (ACNSOL_09965) - 1958007..1960292 (-) 2286 WP_418180351.1 methyl-accepting chemotaxis protein -
  ACNSOL_RS09970 (ACNSOL_09970) - 1960402..1961424 (-) 1023 WP_418180352.1 alanine racemase -
  ACNSOL_RS09975 (ACNSOL_09975) uvrC 1961427..1963268 (-) 1842 WP_418180353.1 excinuclease ABC subunit UvrC Machinery gene
  ACNSOL_RS09980 (ACNSOL_09980) - 1963376..1965799 (+) 2424 WP_418180354.1 methyl-accepting chemotaxis protein -
  ACNSOL_RS09985 (ACNSOL_09985) - 1966024..1967928 (+) 1905 WP_418180355.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 72058.26 Da        Isoelectric Point: 8.5049

>NTDB_id=1103254 ACNSOL_RS09975 WP_418180353.1 1961427..1963268(-) (uvrC) [Aliarcobacter lanthieri strain BNI-4366]
MILEEKLKELPNDAGVYQYFDKEGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMICEVENLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNDDFPRLEITRKIQKGKNIKYFGPYSSGARDMLDSIYEIVPLVQKKSC
IKGKNACLFYQIERCLAPCENKISKEDYSKIVENALEYIYNKTKLISKLKEKMKIYSDDFRFEDAMNLRDRIKTIEKSQI
KTGIDLATNEDIDIFAINSNNKKAVIVRMFLRDGKLTSSNYDFIKINNDLEFDYEEAYKRAIINYYDNELPLLPKEILIA
HELLELDDIEEFLYTKFNKKIKIVNPKKDKKREIINIALNNCNELLRLEEAKNQTTIYEELKELFTLKTLPYLIESFDNS
HLMGQATVGAMIVWNEELNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVQSVG
VNLDIIAIAKEKIDAKAHRAKGSAKDIIHYKDSNGEFKNFNLLTSDKRLQFVQRQRDEAHRFVINFHKKQKRTQDKQISL
LQIKGIGEAKIKKLLLYFGEFDKIKNASFEELKSVLNEKDANTILDYFNDFKD

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=1103254 ACNSOL_RS09975 WP_418180353.1 1961427..1963268(-) (uvrC) [Aliarcobacter lanthieri strain BNI-4366]
ATGATTTTAGAAGAGAAATTAAAAGAGTTACCAAATGATGCTGGAGTTTATCAATACTTTGATAAAGAAGGACATCTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTTAAATCTTACTTTAAATTTACTCCAAAACTATTACCAGCAGATA
AACTAAGCCCTCGTATTTATAAAATGATTTGTGAAGTTGAAAATTTGGAATGGATAGTTGTACCAAATGAACATGATGCA
CTTATATTAGAAAATTCTTTAATAAAACAATTAAAACCAAAATACAATATTTTACTTCGTGATGATAAAACATATCCATA
TATTTTCATAGATTATAATGATGATTTTCCAAGGTTAGAAATAACAAGAAAAATACAAAAAGGGAAAAATATAAAATATT
TTGGTCCTTATTCAAGTGGAGCAAGAGATATGCTTGATAGTATCTATGAAATAGTTCCTTTAGTACAAAAAAAATCATGT
ATCAAAGGGAAAAATGCATGTTTATTTTATCAAATAGAAAGATGTTTAGCTCCTTGTGAGAATAAAATTTCAAAGGAAGA
TTATTCAAAAATAGTTGAAAATGCTTTAGAATATATTTACAATAAAACTAAACTTATTTCTAAATTAAAAGAAAAAATGA
AAATTTATTCTGATGATTTTCGTTTTGAAGATGCTATGAACTTAAGAGATAGAATAAAAACCATTGAAAAATCTCAGATA
AAAACTGGAATTGATTTAGCTACAAATGAAGATATTGATATTTTTGCAATAAACTCAAATAATAAAAAAGCTGTGATTGT
AAGAATGTTTTTAAGAGATGGAAAACTTACATCTTCAAATTATGATTTTATAAAAATAAATAATGATTTAGAATTTGATT
ATGAAGAAGCATATAAAAGAGCTATTATAAACTACTATGATAACGAACTTCCACTTTTACCAAAAGAGATTTTAATAGCA
CATGAGCTTTTAGAATTAGATGATATTGAAGAATTTTTATATACAAAATTTAATAAAAAAATAAAAATAGTAAATCCTAA
AAAAGACAAAAAAAGAGAGATTATAAATATTGCACTAAATAACTGTAATGAACTTCTAAGACTAGAAGAAGCAAAAAATC
AAACAACAATTTATGAAGAGTTAAAAGAGCTATTTACTCTTAAAACTTTACCATATCTTATTGAAAGCTTTGATAATTCT
CATCTTATGGGACAAGCAACAGTTGGTGCAATGATTGTTTGGAATGAAGAGTTAAATTCTTTTGATAAAAAAGCTTTTAG
ACACTACAATCTTGAATCAAAAGATGAATATTCACAAATGAGAGAAATGCTAATAAGAAGAGTTGAAAGTTTTGAAAAAA
ATCCAGCACCAGATTTATGGATAATTGATGGAGGTGAAACTTTACTAAAATTAGCTTATGATATAGTTCAAAGTGTTGGA
GTAAATCTTGATATTATAGCTATTGCAAAAGAAAAAATAGATGCAAAAGCACATAGAGCAAAAGGAAGTGCAAAAGATAT
AATTCACTATAAAGATTCAAATGGTGAATTTAAAAATTTTAATTTACTTACCAGTGATAAAAGACTACAATTCGTTCAAA
GACAAAGAGATGAAGCACACAGATTTGTAATAAATTTCCATAAGAAACAAAAAAGAACTCAAGATAAACAGATATCATTA
CTTCAAATAAAAGGTATTGGTGAAGCAAAGATTAAAAAACTTCTTTTATATTTTGGAGAATTTGATAAGATAAAAAATGC
TTCTTTTGAAGAGTTAAAAAGTGTATTAAATGAAAAAGATGCAAATACAATTTTAGATTATTTTAATGATTTCAAGGATT
AA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.421

97.716

0.512

Multiple sequence alignment