Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNSOO_RS08575 Genome accession   NZ_CP182883
Coordinates   1684263..1685612 (+) Length   449 a.a.
NCBI ID   WP_418178974.1    Uniprot ID   -
Organism   Aliarcobacter lanthieri strain BNI-4364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1679263..1690612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOO_RS08555 (ACNSOO_08555) - 1680045..1680911 (+) 867 WP_026807641.1 hypothetical protein -
  ACNSOO_RS08560 (ACNSOO_08560) - 1680920..1682626 (-) 1707 WP_418178971.1 diguanylate cyclase domain-containing protein -
  ACNSOO_RS08565 (ACNSOO_08565) - 1682610..1683524 (-) 915 WP_418178972.1 cytochrome-c peroxidase -
  ACNSOO_RS08570 (ACNSOO_08570) - 1683568..1684146 (-) 579 WP_418178973.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ACNSOO_RS08575 (ACNSOO_08575) radA 1684263..1685612 (+) 1350 WP_418178974.1 DNA repair protein RadA Machinery gene
  ACNSOO_RS08580 (ACNSOO_08580) ybeY 1685668..1686087 (+) 420 WP_418178975.1 rRNA maturation RNase YbeY -
  ACNSOO_RS08585 (ACNSOO_08585) - 1686105..1686509 (-) 405 WP_026804260.1 Fur family transcriptional regulator -
  ACNSOO_RS08590 (ACNSOO_08590) - 1686700..1688271 (+) 1572 WP_418178976.1 endonuclease/exonuclease/phosphatase family protein -
  ACNSOO_RS08595 (ACNSOO_08595) murJ 1688268..1689590 (+) 1323 WP_034255549.1 murein biosynthesis integral membrane protein MurJ -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49455.06 Da        Isoelectric Point: 6.1942

>NTDB_id=1103221 ACNSOO_RS08575 WP_418178974.1 1684263..1685612(+) (radA) [Aliarcobacter lanthieri strain BNI-4364]
MAKKKITLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEILKQSIKVSSSTSKAKPITEILQDDITRFSSFNYEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIANSGKKVLYVSGEESAGQIKLRANRLEANSENLFLLSEIKLEEILD
ELLRIDYEVCIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNLAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTSEGLISAKDIASKFFDKNKSQSGSSLTVSMEGSRAIILEVQALVCETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKEVYSIDLRLKEAQAQGIKKAIIAQKINLKLDLKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1103221 ACNSOO_RS08575 WP_418178974.1 1684263..1685612(+) (radA) [Aliarcobacter lanthieri strain BNI-4364]
ATGGCAAAAAAGAAAATTACACTTTTTGAGTGTCAACACTGTGGAGAACAATCTACAAAATGGCTTGGTAAATGTCCAAA
TTGTGGTTCTTGGGATAGCTTTATAGAATTAAATCAAGAGCAGCAAGAAATTCTAAAACAATCTATAAAAGTTTCTAGTT
CTACTTCAAAAGCAAAACCAATTACAGAAATTTTACAAGATGATATTACAAGATTTTCATCTTTCAACTATGAATTTGAT
TTAGTTTTAGGTGGAGGGATAGTTCCCGGAAGCCTTACTTTAATAGGAGGAAGTCCAGGAGTTGGTAAATCTACACTTTT
GTTGAAAGTTGCAGGAAGCATTGCAAATAGTGGTAAAAAAGTTCTTTATGTTTCAGGAGAAGAAAGTGCAGGACAGATAA
AATTAAGAGCAAATAGACTTGAAGCAAATAGTGAAAATCTATTTTTATTAAGCGAAATAAAACTTGAAGAAATTTTAGAT
GAACTTCTTAGAATTGATTATGAAGTTTGTATTATTGATTCTATTCAAACAATATATTCTTCAAATCTTACATCAGCACC
AGGAAGTGTATCTCAAGTTAGAGAAATAACATTTGAACTTATGAGAAAAGCAAAAGAATCAAATCTTGCTATGTTTATTA
TTGGGCATATTACAAAAGATGGAAGTATTGCAGGACCTAGAGTTTTAGAACATATGGTTGATACAGTTTTATATTTTGAA
GGAGAAGCAAGTCGTGAATTAAGAATGCTTCGTGGATTTAAGAATAGATTTGGAAGTACAAGTGAAATTGGTATTTTTGA
AATGACATCAGAAGGCTTAATAAGTGCAAAAGATATCGCTTCAAAATTTTTTGATAAAAATAAATCTCAAAGTGGATCAA
GTTTAACTGTAAGTATGGAAGGAAGTCGTGCGATAATACTGGAAGTTCAAGCATTAGTTTGTGAAACAACATTTCCAAAT
CCAAAAAGAAGTGCAACAGGATTTGATACAAACCGTTTAACTATGCTTTTAGCACTTTTAGAAAAAAAATTGGATTTACC
TTTTAATCACTACGATGTTTTTATAAATATTAGTGGAGGTATAAAAATAAAAGAAAGTAGTGCTGATTTAGCTGTAATTG
CTGCAATAATATCTAGTTTTAGAGATAGGCCAATTTCAAAAGAGTCTGTTTTTATAGGTGAAGTGAGTCTAACAGGAGAA
ATAAAAGAAGTTTATTCTATTGATTTAAGACTAAAAGAGGCTCAAGCACAAGGTATAAAAAAAGCAATAATTGCTCAAAA
AATAAATTTAAAACTAGATTTAAAAACTTTTGCAGTAGATGAAGTCTCAAAGATGATTGAGCTATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(83-221)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.577

100

0.481
  radA Streptococcus pneumoniae Rx1

47.577

100

0.481
  radA Streptococcus pneumoniae D39

47.577

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.481
  radA Streptococcus mitis SK321

47.357

100

0.479
  radA Bacillus subtilis subsp. subtilis str. 168

49.535

95.768

0.474
  radA Streptococcus mitis NCTC 12261

49.65

95.546

0.474

Multiple sequence alignment