Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACNSOS_RS03380 Genome accession   NZ_CP182882
Coordinates   676214..678055 (+) Length   613 a.a.
NCBI ID   WP_418185936.1    Uniprot ID   -
Organism   Aliarcobacter vitoriensis strain BNI-4100     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671214..683055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOS_RS03360 (ACNSOS_03360) pnuC 671318..671827 (+) 510 WP_418186306.1 nicotinamide riboside transporter PnuC -
  ACNSOS_RS03365 (ACNSOS_03365) - 671817..672581 (+) 765 WP_418185933.1 phosphotransferase -
  ACNSOS_RS03370 (ACNSOS_03370) - 672691..673605 (+) 915 WP_418185934.1 diguanylate cyclase domain-containing protein -
  ACNSOS_RS03375 (ACNSOS_03375) - 673699..676032 (-) 2334 WP_418185935.1 methyl-accepting chemotaxis protein -
  ACNSOS_RS03380 (ACNSOS_03380) uvrC 676214..678055 (+) 1842 WP_418185936.1 excinuclease ABC subunit UvrC Machinery gene
  ACNSOS_RS03385 (ACNSOS_03385) - 678059..679081 (+) 1023 WP_418185937.1 alanine racemase -
  ACNSOS_RS03390 (ACNSOS_03390) - 679191..681449 (+) 2259 WP_418185938.1 methyl-accepting chemotaxis protein -
  ACNSOS_RS03395 (ACNSOS_03395) - 681464..682591 (-) 1128 WP_418185939.1 iron-containing alcohol dehydrogenase -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71963.33 Da        Isoelectric Point: 9.1772

>NTDB_id=1103207 ACNSOS_RS03380 WP_418185936.1 676214..678055(+) (uvrC) [Aliarcobacter vitoriensis strain BNI-4100]
MILEEKLKELPNDAGVYQYFDKEGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISEVENLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNDDFPRLEITRKIQKGKNIKYFGPYSSGARDMLDSIYEIVPLVQKKAC
IKGKKACLFHQIAKCLAPCEDKISKNEYKKIVENALEYIYNKTKLISKLKEKMKIYSDDFRFEDAMNLRDRIKTIEKSQI
KTGIDLATNEDIDIFSINANSKKAVIVRMFLRDGKLASSNYDFIKVNDDLEFDFDEAYKRAIVNYYDNEIPILPKEILIA
QELQDIEDIEDFLFKRFNKKIKIVNPKKDKKKEIINIALNNCDELLRIENSKNQTTIYEELKELFNLKTLPYLIESFDNS
HLMGQATVGAMIVWNEELNNFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVQSVG
VNLDIIAIAKEKIDAKAHRAKGGAKDIIHYKNSNGEFKSFNLLPSDKRLQFVQRQRDEAHRFVINFHKKQKRTQDKQISL
LQIKGIGEAKIKKLLLFFGEFEKIRNASYEELKNVLNEKDAQTIIEYFKDFKE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=1103207 ACNSOS_RS03380 WP_418185936.1 676214..678055(+) (uvrC) [Aliarcobacter vitoriensis strain BNI-4100]
ATGATTTTAGAAGAAAAATTAAAAGAATTACCAAATGATGCTGGAGTTTATCAATATTTTGATAAAGAAGGACATCTACT
ATACATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTTAAATCTTACTTCAAATTTACTCCAAAACTATTACCCGCAGATA
AATTAAGTCCAAGAATATATAAAATGATTAGTGAAGTTGAAAATTTAGAGTGGATAGTTGTACCAAATGAACACGATGCT
TTAATTCTTGAAAATTCTCTAATAAAACAATTAAAACCAAAATATAATATCTTACTTCGAGATGATAAAACTTATCCATA
TATTTTTATAGATTACAATGATGATTTTCCAAGACTTGAAATAACAAGAAAAATACAAAAAGGGAAAAATATAAAATATT
TTGGTCCTTACTCAAGTGGTGCTAGAGATATGTTAGATAGTATCTATGAAATAGTTCCATTAGTTCAAAAAAAAGCCTGT
ATCAAAGGTAAAAAAGCCTGTTTATTTCACCAAATAGCCAAATGCCTTGCTCCTTGTGAAGATAAAATCTCAAAAAATGA
GTATAAAAAAATAGTTGAAAATGCTTTAGAGTATATATACAATAAGACAAAACTCATCTCTAAACTAAAAGAAAAAATGA
AAATTTATTCAGATGATTTTCGTTTTGAAGATGCAATGAATTTAAGAGATAGAATAAAAACTATTGAAAAATCACAAATA
AAAACTGGTATTGATTTAGCTACAAATGAAGATATTGATATTTTTTCTATCAACGCAAACAGTAAAAAAGCAGTTATTGT
AAGAATGTTTTTAAGAGATGGAAAACTTGCTTCCTCAAATTATGATTTTATAAAAGTAAATGATGATTTAGAATTTGATT
TTGATGAAGCATATAAAAGAGCTATTGTAAACTATTATGACAATGAAATACCAATTTTACCAAAAGAGATTTTGATTGCA
CAAGAACTTCAAGATATTGAAGATATTGAAGATTTTTTATTTAAAAGATTTAATAAAAAAATCAAAATTGTAAATCCAAA
AAAAGATAAGAAAAAAGAAATCATAAACATTGCACTAAATAATTGTGATGAACTATTAAGAATAGAAAATTCTAAAAATC
AAACAACAATTTATGAAGAACTAAAAGAGTTATTCAATCTTAAAACTTTACCATATCTTATCGAAAGTTTTGATAACTCT
CATCTTATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAGAATTAAATAATTTTGATAAAAAAGCTTTTAG
ACACTACAATCTTGAATCAAAAGATGAATATTCACAAATGAGAGAAATGCTAATAAGAAGGGTTGAAAGTTTTGAGAAAA
ATCCAGCTCCTGATTTATGGATAATTGATGGTGGAGAAACTCTACTAAAATTGGCTTATGATATAGTTCAAAGTGTAGGA
GTAAATCTTGATATTATAGCTATTGCAAAAGAAAAAATAGATGCAAAAGCACATAGAGCAAAAGGTGGAGCAAAAGATAT
AATTCACTATAAAAATTCCAATGGTGAATTTAAAAGTTTTAATTTACTTCCCAGTGATAAAAGACTACAATTCGTCCAAA
GACAAAGGGATGAAGCTCATAGATTTGTAATCAATTTTCATAAAAAACAAAAAAGAACTCAAGATAAACAAATATCATTA
CTTCAAATAAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATTTTTTGGTGAATTTGAAAAAATAAGAAATGC
TTCATATGAAGAGTTAAAAAATGTGTTAAATGAAAAAGATGCACAAACAATAATTGAATATTTTAAAGATTTTAAGGAAT
AA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.419

97.716

0.502

Multiple sequence alignment