Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACNSOQ_RS04010 Genome accession   NZ_CP182881
Coordinates   770778..772619 (-) Length   613 a.a.
NCBI ID   WP_026803551.1    Uniprot ID   -
Organism   Aliarcobacter lanthieri strain BNI-4369     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 765778..777619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSOQ_RS03995 (ACNSOQ_03995) - 766212..767339 (+) 1128 WP_418179115.1 iron-containing alcohol dehydrogenase -
  ACNSOQ_RS04000 (ACNSOQ_04000) - 767358..769643 (-) 2286 WP_418179114.1 methyl-accepting chemotaxis protein -
  ACNSOQ_RS04005 (ACNSOQ_04005) - 769753..770775 (-) 1023 WP_026803550.1 alanine racemase -
  ACNSOQ_RS04010 (ACNSOQ_04010) uvrC 770778..772619 (-) 1842 WP_026803551.1 excinuclease ABC subunit UvrC Machinery gene
  ACNSOQ_RS04015 (ACNSOQ_04015) - 772727..775150 (+) 2424 WP_172658491.1 methyl-accepting chemotaxis protein -
  ACNSOQ_RS04020 (ACNSOQ_04020) - 775388..777292 (+) 1905 WP_418179113.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71929.23 Da        Isoelectric Point: 8.9007

>NTDB_id=1103200 ACNSOQ_RS04010 WP_026803551.1 770778..772619(-) (uvrC) [Aliarcobacter lanthieri strain BNI-4369]
MILEEKLKELPNDAGVYQYFDKEGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMICEVENLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNDDFPRLEITRKIQKGKNIKYFGPYSSGARDMLDSIYEIVPLVQKKAC
IKGKKACLFHQIAKCLAPCENKISKEDYSKIVENALEYIYNKTKLISKLKEKMKIYSNDFRFEDAMNLRDRIKTIEKSQI
KTGIDLATNEDIDIFAINSNNKKAVIVRMFLRDGKLTSSNYDFIKINDDLEFDYEEAYKRAIINYYDNELPLLPKEVLIA
HELLELDDIEEFLYTKFNKKIKIVNPKKDKKREIINIALNNCNELLRLEEAKNQTTIYEELKELFNLKTLPYIIESFDNS
HLMGQATVGAMIVWNEELNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVQSVG
VNLDIIAIAKEKIDAKAHRAKGSAKDIIHYKNSSGEFKNFNLLTSDKRLQFVQRQRDEAHRFVINFHKKQKRTQDKQISL
LQIKGIGEAKIKKLLLYFGEFEKIKNASFEELKSVLNEKDANTILDYFNDFKD

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=1103200 ACNSOQ_RS04010 WP_026803551.1 770778..772619(-) (uvrC) [Aliarcobacter lanthieri strain BNI-4369]
ATGATTTTAGAAGAGAAATTAAAAGAGTTACCAAATGATGCTGGAGTTTATCAATACTTTGATAAAGAAGGACATCTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTTAAATCTTACTTTAAATTTACTCCAAAACTATTACCAGCTGATA
AACTAAGCCCTCGTATTTATAAAATGATTTGTGAAGTTGAAAATTTAGAATGGATAGTTGTACCAAATGAACATGATGCA
CTTATATTAGAAAATTCTTTAATAAAACAATTAAAACCAAAATACAATATCTTACTTCGTGATGATAAAACATATCCATA
TATTTTTATAGATTATAATGATGATTTTCCAAGGTTAGAAATAACAAGAAAAATACAAAAAGGGAAAAATATAAAATATT
TTGGTCCTTATTCAAGTGGAGCAAGAGATATGCTAGATAGTATCTATGAAATAGTTCCATTAGTTCAAAAAAAAGCTTGT
ATTAAAGGTAAAAAAGCATGTTTATTTCACCAAATAGCAAAATGCCTTGCTCCTTGTGAGAATAAAATTTCAAAAGAAGA
TTATTCAAAAATAGTTGAAAATGCTTTAGAATATATCTACAATAAAACTAAACTTATTTCTAAATTAAAAGAAAAAATGA
AAATTTATTCAAATGATTTTCGTTTTGAAGATGCTATGAATTTAAGAGATAGAATAAAAACCATTGAAAAATCTCAAATA
AAAACGGGAATAGATCTCGCTACAAATGAAGATATTGATATTTTTGCAATAAACTCAAATAATAAAAAGGCTGTGATTGT
AAGGATGTTTTTAAGAGATGGAAAACTTACCTCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAATTTGATT
ATGAAGAAGCATATAAAAGAGCGATTATAAACTACTATGACAATGAACTTCCTCTTCTACCAAAAGAAGTTTTAATAGCA
CATGAGCTTTTAGAATTAGATGATATTGAAGAATTTTTATATACAAAATTTAATAAAAAAATAAAAATAGTAAATCCTAA
AAAAGATAAAAAAAGAGAGATTATAAATATTGCACTAAATAACTGTAATGAACTTTTAAGACTTGAAGAAGCAAAAAATC
AAACAACAATTTATGAAGAATTAAAAGAGTTATTTAATCTTAAAACTTTACCATATATTATTGAAAGTTTTGATAACTCT
CACCTTATGGGACAAGCAACAGTTGGTGCAATGATTGTTTGGAATGAAGAATTGAACTCTTTTGATAAAAAAGCTTTTAG
ACACTACAATCTTGAATCCAAAGATGAATATTCACAAATGAGAGAAATGCTAATAAGAAGAGTTGAAAGTTTTGAAAAAA
ATCCAGCACCAGATTTATGGATAATTGATGGAGGGGAAACTTTACTAAAATTAGCTTATGATATAGTTCAAAGTGTTGGA
GTAAATCTTGATATTATAGCTATTGCAAAAGAGAAAATAGATGCAAAAGCACACCGAGCAAAAGGAAGTGCAAAAGATAT
AATTCACTATAAAAATTCAAGTGGTGAATTTAAAAATTTTAATTTACTTACCAGTGATAAAAGACTACAATTCGTTCAAA
GACAAAGAGATGAAGCACACAGATTTGTAATAAATTTCCATAAAAAACAAAAAAGAACTCAAGATAAACAGATATCATTA
CTTCAAATAAAAGGTATTGGTGAAGCAAAGATCAAGAAACTTCTTTTATATTTTGGAGAATTTGAAAAGATAAAAAATGC
TTCTTTTGAAGAGTTAAAAAGTGTGTTAAATGAAAAAGACGCAAACACAATTTTAGATTATTTTAATGATTTCAAGGATT
AA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-544)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.254

97.716

0.511

Multiple sequence alignment